Factsheet for VIT_00s0199g00210.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_03s0063g00670.t01
VIT_05s0029g00040.t01
VIT_06s0061g00810.t01
VIT_07s0005g06340.t01
VIT_07s0031g00800.t01
VIT_15s0045g00310.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	VIT_06s0061g00810.t01	AT2G27960.1	20706207
AT5G10440.1	VIT_06s0061g00810.t01	AT2G27970.1	20706207
AT5G10440.1	VIT_05s0029g00040.t01	AT2G32710.1	20706207
AT5G10440.1	VIT_03s0063g00670.t01	AT3G19150.1	20706207
AT5G10440.1	VIT_07s0031g00800.t01	AT3G19150.1	20706207
AT5G10440.1	VIT_07s0005g06340.t01	AT3G24810.1	20706207
AT5G10440.1	VIT_15s0045g00310.t01	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g010460.1.1	Tomato	cytosol	49.01	55.45
Solyc05g051410.2.1	Tomato	nucleus	52.41	53.78
PGSC0003DMT400037827	Potato	nucleus	52.12	53.49
KRH74510	Soybean	nucleus	53.82	52.63
VIT_18s0001g07220.t01	Wine grape	nucleus	51.84	51.55
KRH45568	Soybean	nucleus	50.14	51.16
KRH69654	Soybean	cytosol	34.84	50.62
GSMUA_Achr6P02210_001	Banana	plastid	35.41	50.2
Bra038518.1-P	Field mustard	nucleus	41.08	50.0
CDY13755	Canola	nucleus	41.08	49.66
KRG99448	Soybean	nucleus	50.14	49.44
GSMUA_Achr9P15070_001	Banana	nucleus	49.01	49.43
GSMUA_Achr10P...	Banana	nucleus	44.19	48.6
GSMUA_Achr10P...	Banana	nucleus	47.31	48.55
CDX81286	Canola	nucleus	36.54	48.5
PGSC0003DMT400041637	Potato	nucleus	53.82	48.22
GSMUA_Achr3P06730_001	Banana	nucleus	47.31	48.13
CDY54717	Canola	nucleus	36.26	48.12
GSMUA_Achr5P17920_001	Banana	nucleus	47.03	47.98
Bra009031.1-P	Field mustard	nucleus	40.23	47.81
CDX69832	Canola	nucleus	39.94	47.47
GSMUA_Achr8P23430_001	Banana	nucleus	46.46	47.26
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	47.59	46.93
Bra024383.1-P	Field mustard	nucleus	40.51	46.43
AT5G10440.1	Thale cress	nucleus	39.09	46.31
AT5G65420.3	Thale cress	nucleus	41.64	46.23
CDY08795	Canola	nucleus	40.23	46.1
CDX97009	Canola	nucleus	38.24	46.08
Bra031858.1-P	Field mustard	nucleus	38.81	45.82
Bra037817.1-P	Field mustard	nucleus	36.54	45.74
Bra030232.1-P	Field mustard	nucleus	45.89	45.63
CDY33959	Canola	nucleus	39.38	45.57
GSMUA_Achr5P22980_001	Banana	nucleus	45.04	45.56
CDY25602	Canola	nucleus	45.89	45.51
GSMUA_Achr7P12850_001	Banana	nucleus	45.89	44.88
CDX89480	Canola	nucleus	45.04	44.79
TraesCS6B01G345300.1	Wheat	plastid	44.19	44.19
CDY37828	Canola	nucleus	38.53	44.01
CDX76917	Canola	nucleus	43.91	43.79
CDY14561	Canola	cytosol	40.23	43.69
AT2G22490.2	Thale cress	nucleus	44.76	43.65
HORVU6Hr1G077500.1	Barley	nucleus	43.34	43.59
Zm00001d018128_P001	Maize	nucleus	43.34	43.1
TraesCS6A01G314900.1	Wheat	nucleus	43.63	43.02
EES07560	Sorghum	nucleus	43.34	42.74
Zm00001d052185_P001	Maize	nucleus	43.34	42.5
TraesCS6D01G294200.1	Wheat	nucleus	26.35	36.9
KXG19603	Sorghum	nucleus	35.98	36.49
VIT_01s0026g00710.t01	Wine grape	nucleus	33.43	36.42
VIT_07s0129g01100.t01	Wine grape	nucleus	28.61	32.69
VIT_12s0134g00500.t01	Wine grape	nucleus	27.2	32.65
VIT_00s0322g00010.t01	Wine grape	nucleus	28.05	32.46
VIT_03s0091g01060.t01	Wine grape	nucleus	32.01	31.92
VIT_18s0001g09160.t01	Wine grape	nucleus	26.06	29.02
VIT_00s0194g00280.t01	Wine grape	mitochondrion	22.95	28.42
VIT_03s0180g00040.t01	Wine grape	nucleus	30.31	27.72
VIT_07s0129g00200.t01	Wine grape	nucleus	25.78	27.58
VIT_18s0001g09920.t01	Wine grape	nucleus	28.61	27.15
VIT_08s0007g00790.t01	Wine grape	nucleus	24.08	25.15
VIT_00s0203g00160.t01	Wine grape	cytosol	22.1	24.68

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100265861	wikigene:100265861	MapMan:13.1.1.1.4	EMBL:AM445786	ProteinID:CAN69657
ProteinID:CAN69657.1	ProteinID:CBI18712	ProteinID:CBI18712.3	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:D7SSS8	EMBL:FN594987	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	EntrezGene:LOC100265861	wikigene:LOC100265861	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0001BE1540	ArrayExpress:VIT_00s0199g00210	EnsemblPlantsGene:VIT_00s0199g00210	EnsemblPlants:VIT_00s0199g00210.t01	unigene:Vvi.15418	RefSeq:XP_002268586
RefSeq:XP_002268586.1	RefSeq:XP_010646327.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chrUn:+:11226339..11228800

Molecular Weight (calculated)

39472.3 Da

IEP (calculated)

5.133

GRAVY (calculated)

-0.057

Length

353 amino acids

Sequence
(BLAST)

001: MGSGFDYSVS SLLCSETHTV CFDDLDCNAI DEFFPWNFQN HYQNPIFRNS RSESWIECPM LSEERLREMV EREGEYMPRD DYLGRLRSGD LDLGVRREAV
101: DWILKAHACH GFGPLSLYLS INFLDRVLSV YQLPTRRPWI VRLLSVACLS VAAKVEETNV PLSIELQEVG DPRLMFEAKT IRRMELLVLT HLKWKMQAFT
201: PCSFIDYFLS KVNDHKYPSG SLISRSIQLI LSTIKGIDFL EFKASEIAAA VAICVSEEIQ DIDKAMSCLI HVDEGRVLKC VQLIQNAALL GASTEVAGAS
301: AASVPLSPVG VLDAACWSYK SDDLTVGSCA NSSHNTPDGK RRKLERPSGG GDF

Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)

001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q

Arabidopsis Description

CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.