Factsheet for PGSC0003DMT400037827

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400019919
PGSC0003DMT400040785
PGSC0003DMT400045507
PGSC0003DMT400048460
PGSC0003DMT400066394
PGSC0003DMT400076291
PGSC0003DMT400077428

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	PGSC0003DMT400001218	AT2G27960.1	20706207
AT5G10440.1	PGSC0003DMT400048460	AT2G27960.1	20706207
AT5G10440.1	PGSC0003DMT400001218	AT2G27970.1	20706207
AT5G10440.1	PGSC0003DMT400048460	AT2G27970.1	20706207
AT5G10440.1	PGSC0003DMT400019919	AT2G32710.1	20706207
AT5G10440.1	PGSC0003DMT400076291	AT2G32710.1	20706207
AT5G10440.1	PGSC0003DMT400040785	AT3G19150.1	20706207
AT5G10440.1	PGSC0003DMT400066394	AT3G19150.1	20706207
AT5G10440.1	PGSC0003DMT400045507	AT3G24810.1	20706207
AT5G10440.1	PGSC0003DMT400077428	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc05g051410.2.1	Tomato	nucleus	95.93	95.93
PGSC0003DMT400041637	Potato	nucleus	65.99	57.61
KRH74510	Soybean	nucleus	55.52	52.91
Bra038518.1-P	Field mustard	nucleus	44.19	52.41
VIT_00s0199g00210.t01	Wine grape	nucleus	53.49	52.12
CDY13755	Canola	nucleus	44.19	52.05
KRH45568	Soybean	nucleus	52.33	52.02
CDX81286	Canola	nucleus	39.53	51.13
CDY54717	Canola	nucleus	39.53	51.13
KRH69654	Soybean	cytosol	36.05	51.03
KRG99448	Soybean	nucleus	52.62	50.56
AT5G65420.3	Thale cress	nucleus	45.93	49.69
Bra037817.1-P	Field mustard	nucleus	40.12	48.94
Bra024383.1-P	Field mustard	nucleus	43.31	48.38
CDX69832	Canola	nucleus	41.57	48.15
CDY08795	Canola	nucleus	43.02	48.05
AT5G10440.1	Thale cress	nucleus	41.57	47.99
Bra009031.1-P	Field mustard	nucleus	41.28	47.81
CDX97009	Canola	nucleus	40.41	47.44
GSMUA_Achr6P02210_001	Banana	plastid	34.3	47.39
Bra031858.1-P	Field mustard	nucleus	40.99	47.16
CDY33959	Canola	nucleus	40.99	46.23
GSMUA_Achr3P06730_001	Banana	nucleus	46.51	46.11
GSMUA_Achr10P...	Banana	nucleus	43.02	46.11
Bra030232.1-P	Field mustard	nucleus	47.38	45.92
GSMUA_Achr8P23430_001	Banana	nucleus	46.22	45.82
CDY25602	Canola	nucleus	47.38	45.79
CDX89480	Canola	nucleus	47.09	45.63
CDY37828	Canola	nucleus	40.99	45.63
CDY14561	Canola	cytosol	43.02	45.54
PGSC0003DMT400033588	Potato	nucleus	47.09	45.51
CDX76917	Canola	nucleus	46.8	45.48
AT2G22490.2	Thale cress	nucleus	47.67	45.3
GSMUA_Achr9P15070_001	Banana	nucleus	45.93	45.14
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	46.8	44.97
GSMUA_Achr5P17920_001	Banana	nucleus	45.06	44.8
GSMUA_Achr10P...	Banana	nucleus	44.48	44.48
TraesCS6B01G345300.1	Wheat	plastid	44.77	43.63
HORVU6Hr1G077500.1	Barley	nucleus	44.48	43.59
GSMUA_Achr5P22980_001	Banana	nucleus	43.6	42.98
PGSC0003DMT400088718	Potato	nucleus	38.66	42.9
TraesCS6A01G314900.1	Wheat	nucleus	43.9	42.18
GSMUA_Achr7P12850_001	Banana	nucleus	43.31	41.27
Zm00001d018128_P001	Maize	nucleus	41.57	40.28
Zm00001d052185_P001	Maize	nucleus	41.86	40.0
EES07560	Sorghum	nucleus	40.99	39.39
KXG19603	Sorghum	nucleus	36.92	36.49
TraesCS6D01G294200.1	Wheat	nucleus	25.58	34.92
PGSC0003DMT400068629	Potato	cytosol	23.26	33.33
PGSC0003DMT400040287	Potato	nucleus	31.1	31.85
PGSC0003DMT400064307	Potato	nucleus	32.27	30.58
PGSC0003DMT400039904	Potato	nucleus	28.2	30.12
PGSC0003DMT400031329	Potato	nucleus	27.62	29.5
PGSC0003DMT400020648	Potato	nucleus	27.62	28.61
PGSC0003DMT400066557	Potato	nucleus	28.78	27.65
PGSC0003DMT400039033	Potato	nucleus	24.13	26.69
PGSC0003DMT400068627	Potato	nucleus	23.84	26.62
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	21.8	25.0
PGSC0003DMT400011487	Potato	nucleus	12.79	23.91
PGSC0003DMT400012934	Potato	nucleus	20.93	23.76

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102600091	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1B5Y8
PFAM:PF00134	PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400014595	PGSC:PGSC0003DMG400014595	EnsemblPlants:PGSC0003DMT400037827	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000296D4DF
RefSeq:XP_015170289.1	SEG:seg	:	:	:	:

Description

Cyclin D2.1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400014595]

Coordinates

chr5:+:46111587..46114431

Molecular Weight (calculated)

39008.2 Da

IEP (calculated)

5.065

GRAVY (calculated)

-0.148

Length

344 amino acids

Sequence
(BLAST)

001: MDENRDLLCT ETESFDFDDL DSLTIGQKKN EINNKDLIFG KNGSRSEVLI DLPKISEESF SFMVKREIDF LPKDDYLKRL RSGDLDLSVR REAIDWIWKA
101: CMHFGYGKLN FCLSINYLDR FLSLYELPRG KTWAVQLLAV ACLSIAAKME EIHVPLIVDL QVGNPKFVFE GKTIQRMELL VLTTLKWRML AYTPCTFIEY
201: FLRKMNDDQI PSERLISKAM QLILSSIRGI DFLEFRSSEI AAAVAISVSK EMQANDIDKA MPSFIHEQKG RVMKCLELIQ DLTLVSGTMT TATTISTTAS
301: VPKSPNGVLE AACLSYKSDE SIVGSQTSSE NKRRKLDTSL EEGT

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.