Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 79.94 | 76.82 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 73.55 | 72.49 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 50.58 | 69.88 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 68.02 | 67.44 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 67.44 | 66.86 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 68.02 | 66.86 |
| GSMUA_Achr10P... | Banana | nucleus | 62.21 | 66.67 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 66.57 | 66.19 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 66.57 | 63.43 |
| GSMUA_Achr10P... | Banana | nucleus | 59.01 | 57.18 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 57.27 | 55.81 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 56.69 | 53.72 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 55.23 | 53.37 |
| TraesCS6B01G345300.1 | Wheat | plastid | 54.65 | 53.26 |
| KRH16827 | Soybean | nucleus | 54.36 | 52.68 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 53.2 | 52.14 |
| Solyc04g076040.2.1 | Tomato | nucleus | 53.78 | 52.11 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 54.07 | 51.96 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 53.49 | 51.83 |
| KRH72435 | Soybean | nucleus | 53.78 | 51.82 |
| PGSC0003DMT400033588 | Potato | nucleus | 53.2 | 51.4 |
| Bra038518.1-P | Field mustard | nucleus | 42.15 | 50.0 |
| Zm00001d052185_P001 | Maize | nucleus | 52.03 | 49.72 |
| CDY13755 | Canola | nucleus | 42.15 | 49.66 |
| EES07560 | Sorghum | nucleus | 50.87 | 48.88 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 35.76 | 48.81 |
| KRH52917 | Soybean | nucleus | 49.42 | 48.3 |
| Zm00001d018128_P001 | Maize | nucleus | 49.71 | 48.17 |
| KRG99448 | Soybean | nucleus | 50.0 | 48.04 |
| KRH45568 | Soybean | nucleus | 48.26 | 47.98 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 48.55 | 47.31 |
| KRH62196 | Soybean | nucleus | 48.26 | 47.16 |
| KRH74510 | Soybean | nucleus | 47.97 | 45.71 |
| Solyc11g010460.1.1 | Tomato | cytosol | 40.7 | 44.87 |
| KXG19603 | Sorghum | nucleus | 45.35 | 44.83 |
| PGSC0003DMT400037827 | Potato | nucleus | 44.48 | 44.48 |
| Solyc05g051410.2.1 | Tomato | nucleus | 44.48 | 44.48 |
| KRH69654 | Soybean | cytosol | 31.4 | 44.44 |
| Bra030232.1-P | Field mustard | nucleus | 44.77 | 43.38 |
| CDY25602 | Canola | nucleus | 44.77 | 43.26 |
| CDY54717 | Canola | nucleus | 33.43 | 43.23 |
| CDX81286 | Canola | nucleus | 33.43 | 43.23 |
| AT5G10440.1 | Thale cress | nucleus | 37.21 | 42.95 |
| CDX89480 | Canola | nucleus | 44.19 | 42.82 |
| AT5G65420.3 | Thale cress | nucleus | 39.53 | 42.77 |
| Solyc12g087900.1.1 | Tomato | nucleus | 39.24 | 42.72 |
| CDX76917 | Canola | nucleus | 43.9 | 42.66 |
| Bra024383.1-P | Field mustard | nucleus | 38.08 | 42.53 |
| CDY08795 | Canola | nucleus | 37.79 | 42.21 |
| Bra031858.1-P | Field mustard | nucleus | 36.34 | 41.81 |
| Bra009031.1-P | Field mustard | nucleus | 35.76 | 41.41 |
| CDX69832 | Canola | nucleus | 35.76 | 41.41 |
| CDX97009 | Canola | nucleus | 35.17 | 41.3 |
| Bra037817.1-P | Field mustard | nucleus | 33.72 | 41.13 |
| CDY33959 | Canola | nucleus | 36.34 | 40.98 |
| PGSC0003DMT400088718 | Potato | nucleus | 36.92 | 40.97 |
| CDY14561 | Canola | cytosol | 38.66 | 40.92 |
| AT2G22490.2 | Thale cress | nucleus | 42.73 | 40.61 |
| CDY37828 | Canola | nucleus | 36.34 | 40.45 |
| PGSC0003DMT400041637 | Potato | nucleus | 43.31 | 37.82 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 30.52 | 35.47 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 29.94 | 33.88 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 24.42 | 33.47 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 28.78 | 32.67 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 27.91 | 32.0 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 34.01 | 31.88 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 33.14 | 29.92 |
| GSMUA_Achr10P... | Banana | cytosol | 21.8 | 29.64 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 20.35 | 28.93 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 32.56 | 28.79 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 22.38 | 28.0 |
| GSMUA_Achr10P... | Banana | nucleus | 22.97 | 27.62 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 25.0 | 27.04 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 21.51 | 26.62 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 24.71 | 26.56 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 29.94 | 26.55 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 25.87 | 25.8 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 26.45 | 25.14 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 29.65 | 25.06 |
| GSMUA_AchrUn_... | Banana | cytosol | 22.97 | 24.92 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 29.07 | 23.7 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 27.62 | 23.34 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr10G30250_001 | EnsemblPlants:GSMUA_Achr10P30250_001 |
| EnsemblPlants:GSMUA_Achr10T30250_001 | UniProt:M0RMP9 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00029580FB |
Description
Cyclin-D3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr10G30250_001]
Coordinates
chr10:+:32486277..32488331
Molecular Weight (calculated)
38649.2 Da
IEP (calculated)
5.024
GRAVY (calculated)
-0.176
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MSPCFDCSSS TLLCAEDNDS ILGFDDEEEK GGHRLSWVPE PKRCDFYGDL LVDFPLQSDE FLSLLVKREP EHLPREDYGE RLRSGTLEPS IRRDAIDWMW
101: KVHAYYNFGP LSAYLSVNYF DRFLSEYELP QGKTWMTRLL SVACLSLAAK MEKTDVPQSP DLQDGEAKYV FEARAIMRME LMVLNTLKWR MQAVTPFSFI
201: DFFLHKFNGD DVPNQSSIVR SSELILSTTR GIDFLAFRPS VTAAAIALLV LGEIQNVDVQ KALSCCSHVA KEGVLECYEV IQDKVLMRKQ SAKDVSLSAS
301: SVPQSPIGVL DAPCLSYKSD DATVVSHATC LGPSPASKRR KISR
101: KVHAYYNFGP LSAYLSVNYF DRFLSEYELP QGKTWMTRLL SVACLSLAAK MEKTDVPQSP DLQDGEAKYV FEARAIMRME LMVLNTLKWR MQAVTPFSFI
201: DFFLHKFNGD DVPNQSSIVR SSELILSTTR GIDFLAFRPS VTAAAIALLV LGEIQNVDVQ KALSCCSHVA KEGVLECYEV IQDKVLMRKQ SAKDVSLSAS
301: SVPQSPIGVL DAPCLSYKSD DATVVSHATC LGPSPASKRR KISR
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.