Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030232.1-P | Field mustard | nucleus | 97.75 | 97.75 |
| CDY25602 | Canola | nucleus | 97.46 | 97.19 |
| CDY13755 | Canola | nucleus | 72.11 | 87.67 |
| CDX76917 | Canola | nucleus | 83.1 | 83.33 |
| AT2G22490.2 | Thale cress | nucleus | 76.9 | 75.41 |
| Solyc11g010460.1.1 | Tomato | cytosol | 43.1 | 49.04 |
| CDY54717 | Canola | nucleus | 36.34 | 48.5 |
| CDX81286 | Canola | nucleus | 36.34 | 48.5 |
| Solyc05g051410.2.1 | Tomato | nucleus | 46.2 | 47.67 |
| PGSC0003DMT400037827 | Potato | nucleus | 45.63 | 47.09 |
| CDX69832 | Canola | nucleus | 38.59 | 46.13 |
| CDY08795 | Canola | nucleus | 40.0 | 46.1 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 32.11 | 45.78 |
| CDX97009 | Canola | nucleus | 37.75 | 45.73 |
| KRH45568 | Soybean | nucleus | 44.51 | 45.66 |
| KRG99448 | Soybean | nucleus | 45.63 | 45.25 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 44.79 | 45.04 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 43.66 | 44.29 |
| CDY33959 | Canola | nucleus | 38.03 | 44.26 |
| GSMUA_Achr10P... | Banana | nucleus | 42.82 | 44.19 |
| GSMUA_Achr10P... | Banana | nucleus | 39.72 | 43.93 |
| CDY14561 | Canola | cytosol | 39.72 | 43.38 |
| CDY37828 | Canola | nucleus | 37.75 | 43.37 |
| KRH74510 | Soybean | nucleus | 43.94 | 43.21 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 41.69 | 42.65 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 41.69 | 42.65 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 41.41 | 42.49 |
| KRH69654 | Soybean | cytosol | 29.01 | 42.39 |
| PGSC0003DMT400041637 | Potato | nucleus | 45.92 | 41.37 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 40.56 | 41.26 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 41.41 | 41.06 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 40.0 | 39.34 |
| TraesCS6B01G345300.1 | Wheat | plastid | 38.87 | 39.09 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 38.03 | 38.46 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 38.31 | 37.99 |
| Zm00001d052185_P001 | Maize | nucleus | 38.31 | 37.78 |
| Zm00001d018128_P001 | Maize | nucleus | 37.46 | 37.46 |
| EES07560 | Sorghum | nucleus | 37.75 | 37.43 |
| KXG19603 | Sorghum | nucleus | 35.77 | 36.49 |
| CDY67142 | Canola | nucleus | 32.39 | 33.92 |
| CDY11608 | Canola | nucleus | 30.14 | 33.75 |
| CDY38800 | Canola | nucleus | 29.3 | 32.6 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 22.82 | 32.14 |
| CDY59943 | Canola | nucleus | 31.83 | 31.3 |
| CDX68573 | Canola | nucleus | 29.01 | 29.26 |
| CDX83112 | Canola | nucleus | 29.01 | 29.26 |
| CDY30607 | Canola | nucleus | 29.01 | 29.18 |
| CDY17742 | Canola | nucleus | 29.01 | 29.01 |
| CDY02095 | Canola | nucleus | 26.48 | 28.66 |
| CDY23022 | Canola | nucleus | 26.2 | 28.27 |
| CDY22116 | Canola | nucleus | 23.66 | 28.19 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 13.52 | 27.91 |
| CDY21951 | Canola | nucleus | 23.38 | 27.48 |
| CDX72453 | Canola | nucleus | 27.61 | 27.22 |
| CDY57741 | Canola | nucleus | 27.89 | 27.12 |
| CDY49278 | Canola | nucleus | 28.17 | 27.1 |
| CDX76265 | Canola | nucleus | 27.61 | 26.85 |
| CDX75405 | Canola | nucleus | 27.61 | 26.27 |
| CDY69708 | Canola | nucleus | 27.61 | 26.2 |
| CDY29570 | Canola | nucleus | 23.94 | 25.45 |
| CDY12825 | Canola | nucleus | 25.63 | 25.42 |
| CDY01425 | Canola | nucleus | 25.07 | 25.14 |
| CDX72643 | Canola | nucleus | 23.94 | 25.0 |
| CDY10467 | Canola | cytosol | 20.28 | 21.24 |
| CDY55121 | Canola | cytosol | 20.28 | 20.99 |
| CDY40332 | Canola | cytosol | 20.0 | 20.88 |
| CDX90892 | Canola | nucleus | 8.73 | 20.39 |
| CDX80803 | Canola | cytosol | 19.72 | 15.52 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078DJW5 | EnsemblPlants:CDX89480 | ProteinID:CDX89480 | ProteinID:CDX89480.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00149744001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EBAE8E | SEG:seg | : | : | : | : |
Description
BnaC04g34990D
Coordinates
chrLK031859:-:271401..273417
Molecular Weight (calculated)
40030.4 Da
IEP (calculated)
4.864
GRAVY (calculated)
-0.413
Length
355 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENLTCGET SDSWITDNDD ETIIPGGGFT NDNHELFSKD DNFNRDGSIP MMGSPSSPRE ERIREMLERE VEFSPGDEYL KRLRSGDWEL RLRNQALDWI
101: LKACAHYNFG TLCICLSMNY LDRFLASYDL PKDKTWALQL LAVSCLSLAA KMEESDVPQT VELQVGDPKF VFEAKTIKRM ELLVLNTLNW RLQALTPFSF
201: VDYFIYKTNG HVSENLIYRS SQFILNTTKA IEFLDFRPSE VAAAAAMSAS ISGEIKCIDD DKTLSNLTYV KQERVMGCLS LMRSLTGDNV PGAAKLSPQQ
301: PRLTARVVPV SPIGVLEATC LSYKSDERTF ESCTNSSQSS PDTNNNNSNK RRRKQ
101: LKACAHYNFG TLCICLSMNY LDRFLASYDL PKDKTWALQL LAVSCLSLAA KMEESDVPQT VELQVGDPKF VFEAKTIKRM ELLVLNTLNW RLQALTPFSF
201: VDYFIYKTNG HVSENLIYRS SQFILNTTKA IEFLDFRPSE VAAAAAMSAS ISGEIKCIDD DKTLSNLTYV KQERVMGCLS LMRSLTGDNV PGAAKLSPQQ
301: PRLTARVVPV SPIGVLEATC LSYKSDERTF ESCTNSSQSS PDTNNNNSNK RRRKQ
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.