Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra030232.1-P | Field mustard | nucleus | 98.88 | 99.15 |
| CDX89480 | Canola | nucleus | 97.19 | 97.46 |
| CDY13755 | Canola | nucleus | 73.03 | 89.04 |
| CDX76917 | Canola | nucleus | 83.99 | 84.46 |
| AT2G22490.2 | Thale cress | nucleus | 77.25 | 75.97 |
| Solyc11g010460.1.1 | Tomato | cytosol | 43.54 | 49.68 |
| CDY54717 | Canola | nucleus | 36.52 | 48.87 |
| CDX81286 | Canola | nucleus | 36.52 | 48.87 |
| Solyc05g051410.2.1 | Tomato | nucleus | 46.35 | 47.97 |
| PGSC0003DMT400037827 | Potato | nucleus | 45.79 | 47.38 |
| CDX69832 | Canola | nucleus | 39.04 | 46.8 |
| CDY08795 | Canola | nucleus | 40.45 | 46.75 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 32.3 | 46.18 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 45.51 | 45.89 |
| CDX97009 | Canola | nucleus | 37.64 | 45.73 |
| KRH45568 | Soybean | nucleus | 44.38 | 45.66 |
| KRG99448 | Soybean | nucleus | 45.51 | 45.25 |
| GSMUA_Achr10P... | Banana | nucleus | 43.26 | 44.77 |
| CDY33959 | Canola | nucleus | 38.2 | 44.59 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 43.54 | 44.29 |
| KRH74510 | Soybean | nucleus | 44.66 | 44.04 |
| CDY14561 | Canola | cytosol | 40.17 | 44.0 |
| CDY37828 | Canola | nucleus | 37.92 | 43.69 |
| KRH69654 | Soybean | cytosol | 29.78 | 43.62 |
| GSMUA_Achr10P... | Banana | nucleus | 39.33 | 43.61 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 42.13 | 43.23 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 42.13 | 43.23 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 41.85 | 43.06 |
| PGSC0003DMT400041637 | Potato | nucleus | 46.35 | 41.88 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 41.01 | 41.83 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 41.85 | 41.62 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 40.45 | 39.89 |
| TraesCS6B01G345300.1 | Wheat | plastid | 39.04 | 39.38 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 38.2 | 38.75 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 38.48 | 38.27 |
| Zm00001d052185_P001 | Maize | nucleus | 37.92 | 37.5 |
| Zm00001d018128_P001 | Maize | nucleus | 37.08 | 37.18 |
| EES07560 | Sorghum | nucleus | 37.36 | 37.15 |
| KXG19603 | Sorghum | nucleus | 35.96 | 36.78 |
| CDY11608 | Canola | nucleus | 30.06 | 33.75 |
| CDY67142 | Canola | nucleus | 32.02 | 33.63 |
| CDY38800 | Canola | nucleus | 29.21 | 32.6 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 22.75 | 32.14 |
| CDY59943 | Canola | nucleus | 31.46 | 31.02 |
| CDX68573 | Canola | nucleus | 28.93 | 29.26 |
| CDX83112 | Canola | nucleus | 28.93 | 29.26 |
| CDY30607 | Canola | nucleus | 28.93 | 29.18 |
| CDY17742 | Canola | nucleus | 28.93 | 29.01 |
| CDY02095 | Canola | nucleus | 26.4 | 28.66 |
| CDY23022 | Canola | nucleus | 26.12 | 28.27 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 13.48 | 27.91 |
| CDY22116 | Canola | nucleus | 23.31 | 27.85 |
| CDY21951 | Canola | nucleus | 23.03 | 27.15 |
| CDX72453 | Canola | nucleus | 27.25 | 26.94 |
| CDY57741 | Canola | nucleus | 27.53 | 26.85 |
| CDY49278 | Canola | nucleus | 27.81 | 26.83 |
| CDX76265 | Canola | nucleus | 27.25 | 26.58 |
| CDX75405 | Canola | nucleus | 27.25 | 26.01 |
| CDY69708 | Canola | nucleus | 27.25 | 25.94 |
| CDY12825 | Canola | nucleus | 25.56 | 25.42 |
| CDY29570 | Canola | nucleus | 23.6 | 25.15 |
| CDY01425 | Canola | nucleus | 25.0 | 25.14 |
| CDX72643 | Canola | nucleus | 23.6 | 24.71 |
| CDY10467 | Canola | cytosol | 20.51 | 21.53 |
| CDY55121 | Canola | cytosol | 20.51 | 21.28 |
| CDY40332 | Canola | cytosol | 20.22 | 21.18 |
| CDX90892 | Canola | nucleus | 8.71 | 20.39 |
| CDX80803 | Canola | cytosol | 19.94 | 15.74 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078GKE1 | UniProt:A0A078GKE1 | EnsemblPlants:CDY25602 | ProteinID:CDY25602 |
| ProteinID:CDY25602.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00032875001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EE5280 | SEG:seg | : | : | : |
Description
BnaA04g12940DBnaA04g12940D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GKE1]
Coordinates
chrLK032177:-:191008..193253
Molecular Weight (calculated)
40068.4 Da
IEP (calculated)
4.856
GRAVY (calculated)
-0.413
Length
356 amino acids
Sequence
(BLAST)
(BLAST)
001: MAENLTCGET SDSWITDNDD ETTIPGGGFT NDNHQLFSKD DNFNGDGSIP MMGSPSSPRE ERIREMLERE VEFSPGDEYL KRLRSGDWEL RLRNQALDWI
101: LKACAHYNFG TLCICLSMNY LDRFLASYDL PKDKTWAVQL LAVSCLSLAA KMEESDVPQT VELQQVGDPK FVFEAKTIKR MELLVLNTLN WRLQALTPFS
201: FIDYFIYKTN GHVSENLIYR SSQFILNTTK AIEFLDFRPS EVAAAAAMSA SISGEIKCID DDKTLSNLTY VKQERVMGCL SLMRSLTGEQ VPGAVKLSPQ
301: QPRLTARVVP VSPIGVLEAT CLSYKSDERT LESCTNSSQS SPDTNNNNSN KRRRKQ
101: LKACAHYNFG TLCICLSMNY LDRFLASYDL PKDKTWAVQL LAVSCLSLAA KMEESDVPQT VELQQVGDPK FVFEAKTIKR MELLVLNTLN WRLQALTPFS
201: FIDYFIYKTN GHVSENLIYR SSQFILNTTK AIEFLDFRPS EVAAAAAMSA SISGEIKCID DDKTLSNLTY VKQERVMGCL SLMRSLTGEQ VPGAVKLSPQ
301: QPRLTARVVP VSPIGVLEAT CLSYKSDERT LESCTNSSQS SPDTNNNNSN KRRRKQ
001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q
Arabidopsis Description
CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.