Factsheet for GSMUA_Achr7P19040_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, nucleus, endoplasmic reticulum

Predictor Summary:

nucleus 4
mitochondrion 1
endoplasmic reticulum 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P11790_001
GSMUA_Achr2P22370_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P12510_001
GSMUA_Achr9P27040_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	GSMUA_Achr2P11710_001	AT2G27960.1	20706207
AT5G10440.1	GSMUA_Achr2P11750_001	AT2G27960.1	20706207
AT5G10440.1	GSMUA_Achr2P11710_001	AT2G27970.1	20706207
AT5G10440.1	GSMUA_Achr2P11750_001	AT2G27970.1	20706207
AT5G10440.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr1P00900_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr1P20410_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr2P11790_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr4P26490_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr5P12920_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr5P20430_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr5P21770_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr6P36640_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr8P12510_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr10P...	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr10P...	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr2P22370_001	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr9P27040_001	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr11P...	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr10P...	Banana	nucleus	76.82	79.94
GSMUA_Achr5P22980_001	Banana	nucleus	74.3	76.22
GSMUA_Achr6P02210_001	Banana	plastid	50.56	72.69
GSMUA_Achr9P15070_001	Banana	nucleus	68.99	70.57
GSMUA_Achr8P23430_001	Banana	nucleus	67.6	69.74
GSMUA_Achr3P06730_001	Banana	nucleus	67.32	69.45
GSMUA_Achr10P...	Banana	nucleus	61.17	68.22
GSMUA_Achr5P17920_001	Banana	nucleus	65.92	68.21
GSMUA_Achr7P12850_001	Banana	nucleus	68.44	67.87
GSMUA_Achr10P...	Banana	nucleus	59.22	59.72
GSMUA_Achr3P21210_001	Banana	nucleus	58.1	58.92
GSMUA_Achr2P22330_001	Banana	nucleus	57.82	58.15
TraesCS6B01G345300.1	Wheat	plastid	56.7	57.51
GSMUA_Achr6P10260_001	Banana	cytosol	58.1	57.3
HORVU6Hr1G077500.1	Barley	nucleus	55.87	56.98
TraesCS6A01G314900.1	Wheat	nucleus	55.87	55.87
KRH16827	Soybean	nucleus	54.19	54.65
Zm00001d052185_P001	Maize	nucleus	54.47	54.17
VIT_18s0001g07220.t01	Wine grape	nucleus	53.63	54.08
Solyc04g076040.2.1	Tomato	nucleus	53.07	53.52
Zm00001d018128_P001	Maize	nucleus	52.51	52.96
KRH72435	Soybean	nucleus	52.79	52.94
EES07560	Sorghum	nucleus	52.79	52.79
PGSC0003DMT400033588	Potato	nucleus	52.23	52.53
TraesCS6D01G294200.1	Wheat	nucleus	35.47	50.4
KRH52917	Soybean	nucleus	49.16	50.0
Solyc11g010460.1.1	Tomato	cytosol	43.3	49.68
KRH62196	Soybean	nucleus	48.04	48.86
KRH45568	Soybean	nucleus	46.65	48.27
KRG99448	Soybean	nucleus	48.04	48.04
Bra038518.1-P	Field mustard	nucleus	38.83	47.93
CDY13755	Canola	nucleus	38.83	47.6
VIT_00s0199g00210.t01	Wine grape	nucleus	46.93	47.59
KRH74510	Soybean	nucleus	47.77	47.37
CDY54717	Canola	nucleus	34.92	46.99
KRH69654	Soybean	cytosol	31.84	46.91
Solyc05g051410.2.1	Tomato	nucleus	44.97	46.8
PGSC0003DMT400037827	Potato	nucleus	44.97	46.8
KXG19603	Sorghum	nucleus	44.69	45.98
CDX81286	Canola	nucleus	34.08	45.86
Solyc12g087900.1.1	Tomato	nucleus	39.94	45.25
AT5G65420.3	Thale cress	nucleus	39.66	44.65
Bra031858.1-P	Field mustard	nucleus	37.15	44.48
Bra037817.1-P	Field mustard	nucleus	34.92	44.33
AT5G10440.1	Thale cress	nucleus	36.59	43.96
CDY33959	Canola	nucleus	37.43	43.93
CDY37828	Canola	nucleus	37.43	43.37
Bra024383.1-P	Field mustard	nucleus	37.15	43.18
CDY08795	Canola	nucleus	36.87	42.86
CDX97009	Canola	nucleus	34.92	42.66
PGSC0003DMT400088718	Potato	nucleus	36.87	42.58
CDX69832	Canola	nucleus	35.2	42.42
Bra009031.1-P	Field mustard	nucleus	35.2	42.42
AT2G22490.2	Thale cress	nucleus	42.74	42.27
Bra030232.1-P	Field mustard	nucleus	41.62	41.97
CDY25602	Canola	nucleus	41.62	41.85
PGSC0003DMT400041637	Potato	nucleus	45.81	41.62
CDY14561	Canola	cytosol	37.71	41.54
CDX89480	Canola	nucleus	41.06	41.41
CDX76917	Canola	nucleus	40.78	41.24
GSMUA_Achr3P06030_001	Banana	cytosol	30.73	37.16
GSMUA_Achr9P28180_001	Banana	nucleus	30.45	35.97
GSMUA_Achr7P26100_001	Banana	nucleus	36.03	35.15
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	24.3	34.66
GSMUA_Achr1P22570_001	Banana	nucleus	36.31	34.12
GSMUA_Achr6P24270_001	Banana	nucleus	27.37	32.24
GSMUA_Achr7P19980_001	Banana	nucleus	33.24	30.59
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	20.39	30.17
GSMUA_Achr10P...	Banana	cytosol	21.23	30.04
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	24.86	29.67
GSMUA_Achr10P...	Banana	nucleus	23.18	29.02
GSMUA_Achr6P34040_001	Banana	nucleus	21.51	28.0
GSMUA_Achr6P07740_001	Banana	nucleus	24.58	27.67
GSMUA_Achr6P16910_001	Banana	cytosol	21.23	27.34
GSMUA_Achr1P09780_001	Banana	cytosol	29.33	27.06
GSMUA_Achr4P07110_001	Banana	nucleus	23.46	26.25
GSMUA_Achr4P20220_001	Banana	nucleus	26.54	26.24
GSMUA_Achr2P05260_001	Banana	nucleus	25.14	26.09
GSMUA_AchrUn_...	Banana	cytosol	22.63	25.55
GSMUA_Achr3P13140_001	Banana	nucleus	27.93	24.57
GSMUA_Achr3P01010_001	Banana	nucleus	27.93	24.57
GSMUA_Achr9P12120_001	Banana	nucleus	27.37	23.22

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0003674	GO:GO:0003824	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016301	GO:GO:0016310	GO:GO:0016740
EnsemblPlantsGene:GSMUA_Achr7G19040_001	EnsemblPlants:GSMUA_Achr7P19040_001	EnsemblPlants:GSMUA_Achr7T19040_001	UniProt:M0TIU1	PFAM:PF00134	PFAM:PF02984
PANTHER:PTHR10177	PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002963322
SEG:seg	:	:	:	:	:

Description

Cyclin-D3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr7G19040_001]

Coordinates

chr7:+:21850154..21852189

Molecular Weight (calculated)

39569.5 Da

IEP (calculated)

5.243

GRAVY (calculated)

0.069

Length

358 amino acids

Sequence
(BLAST)

001: MSPSCDCASS ILLCAEDNDS ILGFDDGEEE GGHRPGWVSE PKRCDFYGDI LAGFPLQSDE LLSLLVEREQ EHLPREDYRQ RLCSGALDSS IRRDAIDWIW
101: KAGSSFSFFF LNYSIVHAHY NFGPLSAYLS VNYLDRFLSS YDLPQGKAWM TQLLSVACLS LAAKMEETEV PLSLDLQVGE AKYIFEGRTI QRMELLVMST
201: LKWRMQAVTP FSFIDFFLHK FNGCGAPSKV SLSRSAELIL STIRGIDFLA FRPSVISAAI ALLVLGEAQI VDVDEALSCC CHVAKEGVLG CYEVIQDKVL
301: MRKQSAKDLV SSVSCVPQSP VGVLHAACLS YKSDDATVVS HATCLGLSPA SKRRKTTR

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.