Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d018128_P001 | Maize | nucleus | 94.72 | 96.06 |
| EES07560 | Sorghum | nucleus | 92.22 | 92.74 |
| TraesCS6B01G345300.1 | Wheat | plastid | 75.56 | 77.05 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 74.17 | 76.07 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 75.28 | 75.7 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 52.78 | 75.4 |
| GSMUA_Achr10P... | Banana | nucleus | 49.72 | 55.76 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 53.33 | 54.86 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 37.78 | 54.62 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 54.17 | 54.47 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 51.94 | 53.89 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 51.67 | 53.76 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 51.94 | 53.58 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 51.11 | 53.03 |
| GSMUA_Achr10P... | Banana | nucleus | 51.94 | 52.68 |
| GSMUA_Achr10P... | Banana | nucleus | 49.72 | 52.03 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 50.0 | 50.99 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 51.11 | 50.97 |
| Zm00001d050475_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 42.78 | 49.84 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 48.89 | 49.58 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 49.72 | 49.31 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 48.61 | 49.16 |
| Zm00001d005928_P002 | Maize | nucleus | 48.61 | 48.48 |
| KRH16827 | Soybean | nucleus | 46.94 | 47.61 |
| Solyc04g076040.2.1 | Tomato | nucleus | 46.11 | 46.76 |
| KRH72435 | Soybean | nucleus | 46.11 | 46.5 |
| Solyc11g010460.1.1 | Tomato | cytosol | 39.44 | 45.51 |
| PGSC0003DMT400033588 | Potato | nucleus | 45.0 | 45.51 |
| KRH52917 | Soybean | nucleus | 44.44 | 45.45 |
| KRH62196 | Soybean | nucleus | 44.17 | 45.17 |
| Bra038518.1-P | Field mustard | nucleus | 36.11 | 44.83 |
| CDY54717 | Canola | nucleus | 33.06 | 44.74 |
| AT5G10440.1 | Thale cress | nucleus | 36.94 | 44.63 |
| CDY13755 | Canola | nucleus | 36.11 | 44.52 |
| CDX81286 | Canola | nucleus | 32.22 | 43.61 |
| Solyc12g087900.1.1 | Tomato | nucleus | 38.06 | 43.35 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 42.5 | 43.34 |
| KRH45568 | Soybean | nucleus | 41.39 | 43.06 |
| KRG99448 | Soybean | nucleus | 42.78 | 43.02 |
| CDX97009 | Canola | nucleus | 35.0 | 43.0 |
| CDY08795 | Canola | nucleus | 36.67 | 42.86 |
| AT5G65420.3 | Thale cress | nucleus | 37.78 | 42.77 |
| Bra024383.1-P | Field mustard | nucleus | 36.39 | 42.53 |
| Bra031858.1-P | Field mustard | nucleus | 35.28 | 42.47 |
| CDX69832 | Canola | nucleus | 35.0 | 42.42 |
| Bra009031.1-P | Field mustard | nucleus | 35.0 | 42.42 |
| KRH69654 | Soybean | cytosol | 28.61 | 42.39 |
| PGSC0003DMT400088718 | Potato | nucleus | 36.39 | 42.26 |
| Bra037817.1-P | Field mustard | nucleus | 33.06 | 42.2 |
| PGSC0003DMT400037827 | Potato | nucleus | 40.0 | 41.86 |
| CDY33959 | Canola | nucleus | 35.0 | 41.31 |
| CDY37828 | Canola | nucleus | 35.28 | 41.1 |
| Zm00001d022175_P001 | Maize | nucleus | 42.78 | 40.85 |
| Zm00001d031837_P001 | Maize | nucleus | 48.06 | 40.8 |
| KRH74510 | Soybean | nucleus | 40.83 | 40.72 |
| Solyc05g051410.2.1 | Tomato | nucleus | 38.61 | 40.41 |
| AT2G22490.2 | Thale cress | nucleus | 40.28 | 40.06 |
| CDY14561 | Canola | cytosol | 36.11 | 40.0 |
| CDX76917 | Canola | nucleus | 37.78 | 38.42 |
| CDX89480 | Canola | nucleus | 37.78 | 38.31 |
| Bra030232.1-P | Field mustard | nucleus | 37.5 | 38.03 |
| CDY25602 | Canola | nucleus | 37.5 | 37.92 |
| PGSC0003DMT400041637 | Potato | nucleus | 41.11 | 37.56 |
| Zm00001d029407_P001 | Maize | nucleus | 35.56 | 36.99 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 24.44 | 28.66 |
| Zm00001d044984_P001 | Maize | mitochondrion | 21.67 | 28.26 |
| Zm00001d020353_P001 | Maize | nucleus | 24.44 | 26.59 |
| Zm00001d049334_P001 | Maize | mitochondrion | 21.11 | 26.03 |
| Zm00001d041345_P001 | Maize | cytosol | 24.44 | 25.21 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 23.89 | 24.36 |
| Zm00001d030894_P002 | Maize | nucleus | 23.33 | 24.35 |
| Zm00001d019696_P001 | Maize | cytosol | 26.11 | 24.29 |
| Zm00001d033330_P001 | Maize | nucleus | 23.33 | 23.73 |
| Zm00001d013728_P001 | Maize | cytosol | 23.61 | 23.29 |
| Zm00001d038580_P001 | Maize | plastid | 21.11 | 22.82 |
| Zm00001d005293_P001 | Maize | cytosol | 24.72 | 22.76 |
| Zm00001d048594_P001 | Maize | cytosol | 24.17 | 20.47 |
| Zm00001d028092_P001 | Maize | cytosol | 14.72 | 19.49 |
| Zm00001d003439_P001 | Maize | plastid | 6.11 | 17.32 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | ProteinID:AQK56403.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:K7UL05 |
| PFAM:PF00134 | PFAM:PF02984 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 |
| SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000220F694 | EnsemblPlantsGene:Zm00001d052185 | EnsemblPlants:Zm00001d052185_P001 | EnsemblPlants:Zm00001d052185_T001 |
| SEG:seg | : | : | : | : | : |
Description
Cyclin-D2-1
Coordinates
chr4:+:182579495..182583632
Molecular Weight (calculated)
38980.7 Da
IEP (calculated)
5.440
GRAVY (calculated)
0.144
Length
360 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPGYDCAAS VLLCAEDNAA ILGLDDDGEE SSWAAAATPP RDTVAAAAAA ATGVAVDGIL TEFPLLSDDC VATLVEKEVE HMPAEGYLQK LQRRHGDLDL
101: AAVRKDAIDW IWKVIEHYNF APLTAVLSVN YLDRFLSTYE FPEGRAWMTQ LLAVACLSLA SKIEETFVPL PLDLQVAEAK FVFEGRTIKR MELLVLSTLK
201: WRMHAVTACS FVEYFLHKLS DHGAPSLLAR SRSSDLVLST AKGAEFVVFR PSEIAASVAL AAIGECRSSV IERAASSCKY LDKERVLRCH EMIQEKITAG
301: SIVLKSAGSS ISSVPQSPIG VLDAAACLSQ QSDDATVGSP AVCYHSSSTS KRRRITRRLL
101: AAVRKDAIDW IWKVIEHYNF APLTAVLSVN YLDRFLSTYE FPEGRAWMTQ LLAVACLSLA SKIEETFVPL PLDLQVAEAK FVFEGRTIKR MELLVLSTLK
201: WRMHAVTACS FVEYFLHKLS DHGAPSLLAR SRSSDLVLST AKGAEFVVFR PSEIAASVAL AAIGECRSSV IERAASSCKY LDKERVLRCH EMIQEKITAG
301: SIVLKSAGSS ISSVPQSPIG VLDAAACLSQ QSDDATVGSP AVCYHSSSTS KRRRITRRLL
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.