Subcellular Localization
min:
: max
Winner_takes_all: nucleus, peroxisome, plastid
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plastid 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d003439_P001 | Maize | plastid | 35.13 | 97.64 |
| EER92677 | Sorghum | nucleus | 79.89 | 79.44 |
| Zm00001d028092_P001 | Maize | cytosol | 60.62 | 78.68 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 60.06 | 61.63 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 56.94 | 60.91 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 59.77 | 60.11 |
| Os03t0203800-01 | Rice | nucleus | 57.51 | 58.84 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 19.26 | 56.67 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 33.71 | 37.19 |
| Zm00001d041345_P001 | Maize | cytosol | 32.58 | 32.95 |
| Zm00001d030894_P002 | Maize | nucleus | 32.01 | 32.75 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 25.78 | 32.73 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 29.18 | 32.39 |
| Zm00001d013728_P001 | Maize | cytosol | 33.14 | 32.05 |
| Zm00001d033330_P001 | Maize | nucleus | 32.01 | 31.92 |
| GSMUA_Achr10P... | Banana | nucleus | 24.93 | 30.77 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 26.06 | 29.02 |
| KRH52092 | Soybean | nucleus | 23.8 | 26.75 |
| Zm00001d005928_P002 | Maize | nucleus | 26.63 | 26.04 |
| KRH61407 | Soybean | nucleus | 22.66 | 25.64 |
| KRH77118 | Soybean | nucleus | 24.08 | 25.6 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 23.8 | 25.45 |
| KRH28363 | Soybean | nucleus | 23.8 | 25.38 |
| Zm00001d029407_P001 | Maize | nucleus | 24.65 | 25.14 |
| Zm00001d050475_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 21.81 | 24.92 |
| Zm00001d022175_P001 | Maize | nucleus | 26.35 | 24.67 |
| CDY29570 | Canola | nucleus | 22.66 | 23.95 |
| Zm00001d018128_P001 | Maize | nucleus | 24.08 | 23.94 |
| Zm00001d052185_P001 | Maize | nucleus | 24.36 | 23.89 |
| Bra017840.1-P | Field mustard | nucleus | 22.95 | 23.75 |
| AT4G37630.1 | Thale cress | nucleus | 21.53 | 23.53 |
| CDX72643 | Canola | nucleus | 22.38 | 23.24 |
| Zm00001d031837_P001 | Maize | nucleus | 25.78 | 21.46 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 18.13 | 20.85 |
| Zm00001d020353_P001 | Maize | nucleus | 18.98 | 20.24 |
| Zm00001d019696_P001 | Maize | cytosol | 22.1 | 20.16 |
| Zm00001d005293_P001 | Maize | cytosol | 21.81 | 19.69 |
| Zm00001d044984_P001 | Maize | mitochondrion | 14.73 | 18.84 |
| Zm00001d049334_P001 | Maize | mitochondrion | 13.88 | 16.78 |
| Zm00001d048594_P001 | Maize | cytosol | 19.26 | 16.0 |
| Zm00001d038580_P001 | Maize | plastid | 14.73 | 15.62 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:541916 | ProteinID:AQL08965.1 | UniProt:B4FQ15 | EMBL:BT039203 |
| EMBL:BT043403 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N | PFAM:PF00134 | PIRSF:PIRSF001771 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF273 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI00017B78A5 | EnsemblPlantsGene:Zm00001d048143 |
| EnsemblPlants:Zm00001d048143_P003 | EnsemblPlants:Zm00001d048143_T003 | SEG:seg | : | : | : |
Description
Cyclin-D5-1
Coordinates
chr9:+:150812433..150814543
Molecular Weight (calculated)
37567.6 Da
IEP (calculated)
5.255
GRAVY (calculated)
-0.055
Length
353 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDAAAAAAS TSAPTTPTSI LICLEDGSDL LADADDGAGT DLVVARDERL LVVDQDEEYV ALLLSKESAS GGGGGPVEEM EDWMKAARSG CVRWIIKTTA
101: MFRFGGKTAY VAVNYLDRFL AQRRVNREHA WGLQLLMVAC MSLATKLEEQ HAPRLSELPL DACEFAFDRA SVLRMELLVL GTLEWRMVAV TPFPYISCFA
201: ARFGQDERRA VLVRAVECVF AAIRAMSSVE YQPSTIAVAS ILVARGRETP ADNLDALKAI LGSSFPQLDT GHVYSCYSAM IREDDKSPTQ STSTSTGVAS
301: SGVSVAAHAG GSGSPSPPGA SVSVGANNAA GTAPPATTDN RNKRRRLRSP QRQ
101: MFRFGGKTAY VAVNYLDRFL AQRRVNREHA WGLQLLMVAC MSLATKLEEQ HAPRLSELPL DACEFAFDRA SVLRMELLVL GTLEWRMVAV TPFPYISCFA
201: ARFGQDERRA VLVRAVECVF AAIRAMSSVE YQPSTIAVAS ILVARGRETP ADNLDALKAI LGSSFPQLDT GHVYSCYSAM IREDDKSPTQ STSTSTGVAS
301: SGVSVAAHAG GSGSPSPPGA SVSVGANNAA GTAPPATTDN RNKRRRLRSP QRQ
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG KDETWAMRLL SVACLSLAAK MEERIVPGLS QYPQDHDFVF KPDVIRKTEL LILSTLDWKM NLITPFHYFN YFLAKISQDN HSVSKDLVLL
201: RSSDSLLALT KEISFTEYRQ FVVAAVTTLL ASSSTSSDIR LTREEIANKF GSISWWTSNE NV
101: DLFLHKRFIG KDETWAMRLL SVACLSLAAK MEERIVPGLS QYPQDHDFVF KPDVIRKTEL LILSTLDWKM NLITPFHYFN YFLAKISQDN HSVSKDLVLL
201: RSSDSLLALT KEISFTEYRQ FVVAAVTTLL ASSSTSSDIR LTREEIANKF GSISWWTSNE NV
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.