Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P11710_001 | |
| GSMUA_Achr2P11750_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P07740_001 | Banana | nucleus | 63.31 | 55.35 |
| GSMUA_Achr10P... | Banana | nucleus | 41.01 | 39.86 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 40.65 | 35.65 |
| KRH61407 | Soybean | nucleus | 38.85 | 34.62 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 39.21 | 34.06 |
| KRH52092 | Soybean | nucleus | 38.13 | 33.76 |
| KRH28363 | Soybean | nucleus | 39.57 | 33.23 |
| KRH77118 | Soybean | nucleus | 38.85 | 32.53 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 38.49 | 32.42 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 35.25 | 29.7 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 37.05 | 29.51 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 37.05 | 29.34 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 37.05 | 29.26 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 37.05 | 29.26 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 35.97 | 29.07 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 36.69 | 29.06 |
| CDY29570 | Canola | nucleus | 34.89 | 29.04 |
| AT4G37630.1 | Thale cress | nucleus | 33.45 | 28.79 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 34.89 | 28.78 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 34.53 | 28.57 |
| CDX72643 | Canola | nucleus | 34.89 | 28.53 |
| Bra017840.1-P | Field mustard | nucleus | 34.89 | 28.45 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 25.54 | 28.29 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 33.81 | 27.89 |
| Zm00001d030894_P002 | Maize | nucleus | 34.53 | 27.83 |
| Zm00001d041345_P001 | Maize | cytosol | 34.89 | 27.79 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 24.82 | 27.71 |
| EER92677 | Sorghum | nucleus | 34.89 | 27.32 |
| Os12t0588800-01 | Rice | nucleus | 35.25 | 26.85 |
| Zm00001d033330_P001 | Maize | nucleus | 34.17 | 26.84 |
| EER91226 | Sorghum | nucleus | 35.61 | 26.76 |
| EES17294 | Sorghum | nucleus | 34.89 | 26.72 |
| Zm00001d013728_P001 | Maize | cytosol | 34.53 | 26.3 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 35.25 | 26.06 |
| Os03t0203800-01 | Rice | nucleus | 32.01 | 25.8 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 32.73 | 25.78 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 22.3 | 25.62 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 26.98 | 25.0 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 27.34 | 25.0 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 26.26 | 24.66 |
| GSMUA_Achr10P... | Banana | nucleus | 28.06 | 24.3 |
| HORVU4Hr1G013700.2 | Barley | plastid | 34.17 | 24.05 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 29.86 | 23.71 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 29.5 | 23.63 |
| GSMUA_Achr10P... | Banana | cytosol | 20.86 | 22.92 |
| GSMUA_Achr10P... | Banana | nucleus | 28.78 | 22.54 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 28.06 | 22.48 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 28.78 | 22.47 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 24.46 | 22.44 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 27.7 | 22.25 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 29.14 | 22.07 |
| Zm00001d028092_P001 | Maize | cytosol | 21.58 | 22.06 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 27.34 | 21.53 |
| GSMUA_Achr10P... | Banana | nucleus | 26.62 | 21.51 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 28.06 | 21.49 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 27.34 | 21.23 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 26.62 | 21.2 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 20.5 | 20.73 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 26.62 | 20.5 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 27.7 | 20.21 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 25.18 | 19.34 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 26.62 | 19.07 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 23.38 | 18.84 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 25.54 | 18.25 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 25.9 | 17.69 |
| GSMUA_AchrUn_... | Banana | cytosol | 19.78 | 17.35 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 26.26 | 17.3 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 25.18 | 17.2 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 7.19 | 16.67 |
| Zm00001d003439_P001 | Maize | plastid | 7.19 | 15.75 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr6G16910_001 | EnsemblPlants:GSMUA_Achr6P16910_001 |
| EnsemblPlants:GSMUA_Achr6T16910_001 | UniProt:M0T7N9 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF255 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI000294FC31 | SEG:seg |
Description
Putative Cyclin-D5-3 [Source:GMGC_GENE;Acc:GSMUA_Achr6G16910_001]
Coordinates
chr6:+:11291764..11292931
Molecular Weight (calculated)
31504.9 Da
IEP (calculated)
5.086
GRAVY (calculated)
-0.005
Length
278 amino acids
Sequence
(BLAST)
(BLAST)
001: MADSGCMASL KDDEVLCEDT LMLETDDEYI ELLLSKENRC CTRARAASSD DSLKSARSDA VRWILKMKVL FGLGMRTAYV AASYLDHFCV HRSIDSMRDK
101: SWAIRLLSLS CLSLAVKMEE LKVPALSEFR TEDYRFQTEA IQRMELLILS TLEWKMSMIT PFSYLSYFAS RFQEHGSEDL AWEAITLILA SIEAINLVEY
201: RPSVVAAAAI LAASHERLTQ KSVELKLSAI SSFRPLDTDR VFSCYSLMIQ ETDREASHIK TFSFKSIGSK SLDCQQLC
101: SWAIRLLSLS CLSLAVKMEE LKVPALSEFR TEDYRFQTEA IQRMELLILS TLEWKMSMIT PFSYLSYFAS RFQEHGSEDL AWEAITLILA SIEAINLVEY
201: RPSVVAAAAI LAASHERLTQ KSVELKLSAI SSFRPLDTDR VFSCYSLMIQ ETDREASHIK TFSFKSIGSK SLDCQQLC
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.