CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES04403
KXG40187
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	KXG40187	AT2G27960.1	20706207
AT4G37630.1	KXG40187	AT2G27970.1	20706207
AT4G37630.1	EES04403	AT3G48750.1	20706207
AT4G37630.1	KXG40336	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d013728_P001	Maize	cytosol	80.27	81.37
Zm00001d033330_P001	Maize	nucleus	76.76	80.23
TraesCS4B01G080500.1	Wheat	nucleus	59.19	65.18
TraesCS4A01G234600.1	Wheat	cytosol	58.65	64.39
TraesCS4D01G079400.1	Wheat	cytosol	58.11	63.8
Os03t0617500-01	Rice	cytosol, nucleus	61.35	60.37
HORVU4Hr1G013700.2	Barley	plastid	57.57	53.92
EES17294	Sorghum	nucleus	52.16	53.17
GSMUA_Achr4P07110_001	Banana	nucleus	34.05	39.38
GSMUA_Achr6P16910_001	Banana	cytosol	26.76	35.61
GSMUA_Achr10P...	Banana	nucleus	26.49	34.27
EER92677	Sorghum	nucleus	32.43	33.8
VIT_18s0001g09160.t01	Wine grape	nucleus	28.92	33.75
GSMUA_Achr6P07740_001	Banana	nucleus	28.65	33.33
KRH52092	Soybean	nucleus	27.3	32.17
KRH61407	Soybean	nucleus	26.76	31.73
VIT_07s0129g00200.t01	Wine grape	nucleus	27.03	30.3
KRH28363	Soybean	nucleus	26.22	29.31
KRH77118	Soybean	nucleus	25.68	28.61
EER97558	Sorghum	nucleus	24.59	26.38
AT4G37630.1	Thale cress	nucleus	22.97	26.32
EES14027	Sorghum	nucleus	26.49	26.27
OQU89443	Sorghum	nucleus	23.51	26.13
CDY29570	Canola	nucleus	23.51	26.05
EER96886	Sorghum	nucleus	26.49	25.93
CDX72643	Canola	nucleus	23.78	25.88
Bra017840.1-P	Field mustard	nucleus	23.78	25.81
OQU92473	Sorghum	nucleus	24.05	25.72
EES07560	Sorghum	nucleus	23.51	24.3
EER96424	Sorghum	cytosol	24.86	24.08
KXG19603	Sorghum	nucleus	21.62	22.99
EER99528	Sorghum	cytosol	18.65	21.97
OQU84124	Sorghum	nucleus	18.65	16.16

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EntrezGene:8064491	UniProt:C5WSA9	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlants:EER91226	ProteinID:EER91226	ProteinID:EER91226.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	PANTHER:PTHR10177
PANTHER:PTHR10177:SF255	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3001G166800	SUPFAM:SSF47954	UniParc:UPI0001A821A7
RefSeq:XP_002464228.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:13890658..13894277

Molecular Weight (calculated)

38841.4 Da

IEP (calculated)

4.544

GRAVY (calculated)

-0.068

Length

370 amino acids

Sequence
(BLAST)

001: MGEAAAAEEG CSAGCSFSSS LMCLEDGADL DAAGGSAEGA GDVGRLAAFL YGDAGEDHDQ EEYMDHLVSK ETSFCCSPSS SSPVFSDAGA EPCPSSTASS
101: DEWFRCARRA TVEWIFETRA YFGFSHRTAY LAVSYMDRFC LRRCMDSSVM PWAARLLAVA CVSLAAKMEE YRAPALSEFR ADDDYDFCSV SIRRMELLVL
201: STLGWRMGDV TPLDYLPCLS SRLHRDGGTG DGVLVAAKAA ALIFSAAEAA SVLDYRPSTV AVAAVLAAAH GAMAKEALES KMSSLSPSCL LDKDDVHACY
301: STMLGESSSS ATATPSKQAA KKRPPPPPPP ASSSGSTSHE SVGDYAASSL AAAAESNKRP RLELPAVVGP

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.