Factsheet for HORVU4Hr1G013700.2

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	nucleus
TargetP:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G079310.1
HORVU4Hr1G085830.4
HORVU6Hr1G013680.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	HORVU4Hr1G079310.1	AT2G27960.1	20706207
AT4G37630.1	HORVU4Hr1G079310.1	AT2G27970.1	20706207
AT4G37630.1	HORVU4Hr1G085830.4	AT3G48750.1	20706207
AT4G37630.1	HORVU6Hr1G013680.2	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G080500.1	Wheat	nucleus	82.03	96.43
TraesCS4D01G079400.1	Wheat	cytosol	80.76	94.66
TraesCS4A01G234600.1	Wheat	cytosol	79.75	93.47
Os03t0617500-01	Rice	cytosol, nucleus	58.73	61.7
EER91226	Sorghum	nucleus	53.92	57.57
Zm00001d013728_P001	Maize	cytosol	52.66	56.99
Zm00001d033330_P001	Maize	nucleus	50.63	56.5
HORVU5Hr1G018180.1	Barley	nucleus	48.1	54.44
GSMUA_Achr4P07110_001	Banana	nucleus	29.62	36.56
GSMUA_Achr6P16910_001	Banana	cytosol	24.05	34.17
VIT_18s0001g09160.t01	Wine grape	nucleus	26.84	33.44
GSMUA_Achr10P...	Banana	nucleus	23.54	32.52
GSMUA_Achr6P07740_001	Banana	nucleus	26.08	32.39
KRH61407	Soybean	nucleus	24.3	30.77
KRH52092	Soybean	nucleus	24.3	30.57
VIT_07s0129g00200.t01	Wine grape	nucleus	23.54	28.18
AT4G37630.1	Thale cress	nucleus	22.78	27.86
KRH28363	Soybean	nucleus	23.04	27.49
KRH77118	Soybean	nucleus	22.78	27.11
CDY29570	Canola	nucleus	22.28	26.35
CDX72643	Canola	nucleus	22.53	26.18
Bra017840.1-P	Field mustard	nucleus	22.53	26.1
HORVU0Hr1G013250.1	Barley	cytosol	13.16	24.3
HORVU6Hr1G077500.1	Barley	nucleus	21.52	24.22
HORVU5Hr1G050270.8	Barley	cytosol	21.52	24.22
HORVU7Hr1G117300.3	Barley	cytosol	9.87	23.64
HORVU5Hr1G059770.2	Barley	nucleus	21.01	23.25
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	14.68	23.11
HORVU7Hr1G033350.3	Barley	cytosol	16.46	21.59
HORVU2Hr1G030130.1	Barley	plastid	18.99	16.38

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	UniProt:A0A287NAH5	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:HORVU4Hr1G013700
EnsemblPlants:HORVU4Hr1G013700.2	PFAM:PF00134	PFAM:PF02984	PANTHER:PTHR10177	PANTHER:PTHR10177:SF225	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000B47B850	SEG:seg	:	:

Description

No Description!

Coordinates

chrchr4H:-:48651692..48654075

Molecular Weight (calculated)

42759.4 Da

IEP (calculated)

4.675

GRAVY (calculated)

-0.159

Length

395 amino acids

Sequence
(BLAST)

001: AATSPWLLLP PSSTPTSPPL PAPAALPRPD PNTHGTLTIP PVLPSGGVYI TEARNGSTME AEDYAAGCCF SLMCQEDGAD LLGDGFADED GGKLLLMYSA
101: GDDNDGEEDE EGYMDHLVSK ESSFYSADPS PSMASEDWFQ CARRDTVRWI LETRGHFGFC HRTAYVAIAY FDRFSLRRCV DRSVMPWAAR LLAIACVSLA
201: AKMDECQAPA LSEFRADDDY DFSCDSIRRM EVLVLSTLDW RMGAVTPFDY LPCLSSRLRR FNGAGRGGGG GLIAVKAAAL IFSAAEVASV LDYRPSTVAA
301: VAVLAATHGV LTREPLESKI NSLSPTCLLE KEDVYACYTM MLRDPSSPSK TAKRPASDRS DGDSTYARLD AASFSVAAAM NNNKRVRLEL PAVHR

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.