Factsheet for HORVU5Hr1G018180.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU4Hr1G079310.1
HORVU4Hr1G085830.4
HORVU6Hr1G013680.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	HORVU4Hr1G079310.1	AT2G27960.1	20706207
AT4G37630.1	HORVU4Hr1G079310.1	AT2G27970.1	20706207
AT4G37630.1	HORVU4Hr1G085830.4	AT3G48750.1	20706207
AT4G37630.1	HORVU6Hr1G013680.2	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G068600.1	Wheat	nucleus	96.56	96.01
TraesCS5B01G075000.1	Wheat	nucleus	96.56	95.74
TraesCS5D01G080600.1	Wheat	nucleus	96.28	95.45
Os12t0588800-01	Rice	nucleus	74.79	71.51
Zm00001d030894_P002	Maize	nucleus	68.77	69.57
Zm00001d041345_P001	Maize	cytosol	69.34	69.34
EES17294	Sorghum	nucleus	71.92	69.15
HORVU4Hr1G013700.2	Barley	plastid	54.44	48.1
GSMUA_Achr4P07110_001	Banana	nucleus	36.68	40.0
GSMUA_Achr10P...	Banana	nucleus	32.09	39.16
GSMUA_Achr6P16910_001	Banana	cytosol	29.51	37.05
VIT_18s0001g09160.t01	Wine grape	nucleus	31.81	35.02
GSMUA_Achr6P07740_001	Banana	nucleus	31.52	34.59
KRH52092	Soybean	nucleus	29.23	32.48
KRH61407	Soybean	nucleus	28.65	32.05
VIT_07s0129g00200.t01	Wine grape	nucleus	29.23	30.91
KRH28363	Soybean	nucleus	28.65	30.21
KRH77118	Soybean	nucleus	28.65	30.12
AT4G37630.1	Thale cress	nucleus	26.93	29.1
HORVU5Hr1G050270.8	Barley	cytosol	28.65	28.49
CDY29570	Canola	nucleus	26.65	27.84
CDX72643	Canola	nucleus	26.93	27.65
Bra017840.1-P	Field mustard	nucleus	26.93	27.57
HORVU6Hr1G077500.1	Barley	nucleus	25.5	25.36
HORVU5Hr1G059770.2	Barley	nucleus	24.93	24.37
HORVU0Hr1G013250.1	Barley	cytosol	14.61	23.83
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	16.05	22.31
HORVU7Hr1G033350.3	Barley	cytosol	19.2	22.26
HORVU7Hr1G117300.3	Barley	cytosol	9.46	20.0
HORVU2Hr1G030130.1	Barley	plastid	20.63	15.72

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EMBL:AK358174	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	UniProt:F2D2R7	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
EnsemblPlantsGene:HORVU5Hr1G018180	EnsemblPlants:HORVU5Hr1G018180.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF225	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0002005280
SEG:seg	:	:	:	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D2R7]

Coordinates

chrchr5H:-:72975835..72978062

Molecular Weight (calculated)

37449.1 Da

IEP (calculated)

4.575

GRAVY (calculated)

-0.024

Length

349 amino acids

Sequence
(BLAST)

001: MPGMEAAEDY ASCAFSLTCP EDGAELGDGA VDHGDLFLFY AGGGADEDGD DEYVEQLVSK EASFCSSSDS GDADCSSAAS EDWFLQARLA AVKWILQTRG
101: CFGFGHRTAY LAIAYFDRFF LRRRVDRAAM PWAARLLSVA CVSVAAKMEE YCAPALSELD AGGGYEFCSA SVRRMELLVL STLGWRMAAV TPFDYLPCFS
201: SRLDRHDGRG GGGHDPARVA LKSIGFIFAT AQAGSVLDYR PSTVAAAAIL AASYGALLTK EALESKMGNL SPSCPIEKEH VHACYSMMVG DLRNRMTNGK
301: RSLPCSDANE VATSTYDSVL VDDVADTAAF MAAVSEMNKR IRLEPPGIH

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.