Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5B01G243900.1 | Wheat | nucleus | 58.41 | 35.21 |
| TraesCS5A01G247000.1 | Wheat | nucleus | 57.94 | 34.93 |
| TraesCS5A01G246800.1 | Wheat | nucleus | 57.01 | 34.56 |
| TraesCS5B01G244100.1 | Wheat | nucleus | 57.48 | 34.17 |
| TraesCS5D01G253200.1 | Wheat | nucleus | 56.54 | 33.99 |
| HORVU7Hr1G033350.3 | Barley | cytosol | 47.66 | 33.89 |
| TraesCS5D01G253500.1 | Wheat | nucleus | 57.01 | 33.7 |
| Os09t0466100-01 | Rice | nucleus | 48.13 | 28.93 |
| EER96886 | Sorghum | nucleus | 50.93 | 28.84 |
| Zm00001d005928_P002 | Maize | nucleus | 47.66 | 28.25 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 27.1 | 23.11 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 37.85 | 23.08 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 29.44 | 17.65 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 26.64 | 16.24 |
| HORVU2Hr1G030130.1 | Barley | plastid | 33.64 | 15.72 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 23.83 | 14.61 |
| HORVU4Hr1G013700.2 | Barley | plastid | 24.3 | 13.16 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 7.48 | 9.7 |
Protein Annotations
| EnsemblPlants:HORVU0Hr1G013250.1 | EnsemblPlantsGene:HORVU0Hr1G013250 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| ncoils:Coil | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF339 | PFAM:PF00134 | PFscan:PS51257 | PIRSF:PIRSF001771 |
| SEG:seg | SUPFAM:SSF47954 | UniParc:UPI000B47755B | UniProt:A0A287E0T3 | MapMan:13.1.1.1.4 | : |
Description
No Description!
Coordinates
chrchrUn:-:75951989..75953440
Molecular Weight (calculated)
18499.5 Da
IEP (calculated)
6.515
GRAVY (calculated)
0.103
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MDRFLSLYHI PEGKAWMTQL LSVACLSLAA KMEETSVPQS MDLQAGDARY VFEAKTIQRM ELLVLSTLKW RMQAVTPFSY LDXXXXXXXX XXXXXXXAVR
101: DAAELVLCIS RGTNCLEFRP SEIAATVAAA VAGEEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXT RDNISTRKQT TTSLVTVEIF ISIYIGVRLL
201: YSHFSMASTP RYYP
101: DAAELVLCIS RGTNCLEFRP SEIAATVAAA VAGEEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXT RDNISTRKQT TTSLVTVEIF ISIYIGVRLL
201: YSHFSMASTP RYYP
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK VKNNPPNISN S
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK VKNNPPNISN S
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.