CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 2
golgi 2
plasma membrane 2
endoplasmic reticulum 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005928_P002	Maize	nucleus	84.39	88.37
Os09t0466100-01	Rice	nucleus	67.46	71.63
TraesCS5A01G246800.1	Wheat	nucleus	65.08	69.69
TraesCS5A01G247000.1	Wheat	nucleus	64.81	69.01
TraesCS5D01G253200.1	Wheat	nucleus	64.29	68.26
TraesCS5B01G243900.1	Wheat	nucleus	64.02	68.17
TraesCS5B01G244100.1	Wheat	nucleus	64.02	67.22
TraesCS5D01G253500.1	Wheat	nucleus	63.76	66.57
EES14027	Sorghum	nucleus	60.85	61.66
HORVU7Hr1G033350.3	Barley	cytosol	42.06	52.82
HORVU0Hr1G013250.1	Barley	cytosol	28.84	50.93
EES07560	Sorghum	nucleus	47.88	50.56
EER97558	Sorghum	nucleus	42.33	46.38
KXG19603	Sorghum	nucleus	42.06	45.69
OQU92473	Sorghum	nucleus	35.45	38.73
OQU89443	Sorghum	nucleus	30.95	35.14
EER99528	Sorghum	cytosol	22.75	27.39
EER91226	Sorghum	nucleus	25.93	26.49
EER92677	Sorghum	nucleus	24.6	26.2
EES17294	Sorghum	nucleus	25.13	26.17
EER96424	Sorghum	cytosol	24.07	23.82
OQU84124	Sorghum	nucleus	20.37	18.03

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EntrezGene:8063725	UniProt:C5X2Z6	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlants:EER96886	ProteinID:EER96886	ProteinID:EER96886.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF339	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3002G230900	SUPFAM:SSF47954
unigene:Sbi.16928	UniParc:UPI0001A83630	RefSeq:XP_002460365.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:+:62228246..62230909

Molecular Weight (calculated)

41083.8 Da

IEP (calculated)

5.315

GRAVY (calculated)

-0.134

Length

378 amino acids

Sequence
(BLAST)

001: MAPMSSYEMA ASILLCAEDS SSILDLEAEA EEEEVMLAPR SRTRTRGEPS VEFPVPSEEC VDGFVEAEAA HMPREDYAER LRGGGMDLRV RMDAIDWIWK
101: VHRYYGFGPL TACLAVNYLD RFLSLYQLPE GKAWTTQLLS VACLSLAAKM EETYVPPSLD LQVGDARYVF EAKTIQRMEL LVLSTLKWRM QAVTPFSYID
201: YFLHRLNGGG GDAPSRRAVL RSAELILCIA RGTHCLDFRP SEIAAAVAAA VAGEEHAVDI VDKACTHRVH KERVSRCLEA IQAATVALPG TTVPQPLMKT
301: EGTSSGRRAA SSGTATTVPR SPTGVLDAAG CLSYRSDDTA AAAAAAAASS HATSSWRDED DDSSSPVVVC SKRRKISR

Best Arabidopsis Sequence Match ( AT5G10440.1 )
(BLAST)

001: MAEFMEPNLV SNFDDEKSNS VDTRSIFQMG FPLESEEIVR EMIEKERQHS PRDDYLKRLR NGDLDFNVRI QALGWIWKAC EELQFGPLCI CLAMNYLDRF
101: LSVHDLPSGK AWTVQLLAVA CLSLAAKIEE TNVPELMQLQ VGAPMFVFEA KSVQRMELLV LNVLRWRLRA VTPCSYVRYF LSKINGYDQE PHSRLVTRSL
201: QVIASTTKGI DFLEFRASEI AAAVALSVSG EHFDKFSFSS SFSSLEKERV KKIGEMIERD GSSSSSQTPN NTVLQFKSRR YSHSLSTASV SSSLTSLS

Arabidopsis Description

CYCD4-2Cyclin-D4-2 [Source:UniProtKB/Swiss-Prot;Acc:Q0WQN9]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.