Factsheet for Os09t0466100-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d005928_P002	Maize	nucleus	69.38	68.42
EER96886	Sorghum	nucleus	71.63	67.46
TraesCS5B01G243900.1	Wheat	nucleus	65.73	65.92
TraesCS5A01G246800.1	Wheat	nucleus	64.89	65.44
TraesCS5A01G247000.1	Wheat	nucleus	64.61	64.79
TraesCS5D01G253200.1	Wheat	nucleus	63.76	63.76
TraesCS5B01G244100.1	Wheat	nucleus	64.33	63.61
TraesCS5D01G253500.1	Wheat	nucleus	64.33	63.26
Os08t0479300-01	Rice	nucleus	59.83	55.61
HORVU7Hr1G033350.3	Barley	cytosol	42.13	49.83
HORVU0Hr1G013250.1	Barley	cytosol	28.93	48.13
Os07t0620800-01	Rice	nucleus	44.1	44.1
Os03t0392000-00	Rice	cytosol, nucleus, plastid	30.06	43.5
Os09t0382300-00	Rice	nucleus	32.58	37.66
Os06t0236600-00	Rice	nucleus	26.97	26.45
Os09t0111100-01	Rice	cytosol	26.97	26.37
Os07t0556000-01	Rice	cytosol	23.03	25.62
Os12t0588800-01	Rice	nucleus	25.56	24.93
Os03t0617500-01	Rice	cytosol, nucleus	25.28	23.94
Os11t0706801-00	Rice	nucleus	19.94	22.19
Os03t0203800-01	Rice	nucleus	20.79	21.45

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EntrezGene:4347313	EMBL:AB080248	EMBL:AK063940	ProteinID:BAD17511.1
ProteinID:BAD17512.1	ProteinID:BAF25331.1	ProteinID:BAT08517.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	ProteinID:EAZ45038.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051301	EnsemblPlantsGene:Os09g0466100	EnsemblPlants:Os09t0466100-01
PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF339	UniProt:Q6YXH8
SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI00000A3D1D	RefSeq:XP_015610698.1	SEG:seg

Description

D-TYPE CYCLIN 4;1Cyclin, A/B/D/E domain containing protein. (Os09t0466100-01);Similar to cDNA clone:001-123-E03, full insert sequence. (Os09t0466100-02)

Coordinates

chr9:+:17680931..17683507

Molecular Weight (calculated)

38939.1 Da

IEP (calculated)

4.557

GRAVY (calculated)

-0.123

Length

356 amino acids

Sequence
(BLAST)

001: MAALTSYEMA ASILLCAEDS SSVLGFGGEE EEEEEDVVAG KRARCAGPPP PPCVDVAGVD FAVPSEECVA RLVETEADHM PREDYAERLR AGGGDGDLDL
101: RVRMDAIDWI WKVHSYYSFA PLTACLAVNY LDRFLSLYQL PDGKDWMTQL LAVACLSLAA KMEETDVPQS LDLQVGEERY VFEAKTIQRM ELLVLSTLKW
201: RMQAVTPFSY VDYFLRELNG GDPPSGRSAL LSSELILCIA RGTECLGFRP SEIAAAVAAA VVGEEHAAFS HVNKERMSHC QEVIQAMELI HPKPSSPSRV
301: FVSSSIPRSP TGVLDAAGCL SYRSDDSAVA SHYAASSWGY EHDSSPVSSK RRKISR

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.