Factsheet for TraesCS5D01G253500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
MultiLoc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G246800.1	Wheat	nucleus	90.33	92.63
TraesCS5B01G243900.1	Wheat	nucleus	88.67	90.42
TraesCS5D01G253200.1	Wheat	nucleus	88.67	90.17
TraesCS5B01G244100.1	Wheat	nucleus	88.95	89.44
Os09t0466100-01	Rice	nucleus	63.26	64.33
EER96886	Sorghum	nucleus	66.57	63.76
Zm00001d005928_P002	Maize	nucleus	62.98	63.16
HORVU7Hr1G033350.3	Barley	cytosol	51.66	62.13
HORVU0Hr1G013250.1	Barley	cytosol	33.7	57.01
TraesCS6D01G294200.1	Wheat	nucleus	29.56	42.46
TraesCS2D01G171700.1	Wheat	nucleus	37.57	39.77
TraesCS5D01G206200.1	Wheat	nucleus	32.04	31.61
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	24.86	28.75
TraesCS5D01G165900.1	Wheat	cytosol	27.62	28.25
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	24.86	26.71
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	24.59	25.87
TraesCS5D01G080600.1	Wheat	nucleus	25.14	25.85
TraesCS4D01G079400.1	Wheat	cytosol	23.76	25.52

Protein Annotations

EnsemblPlants:TraesCS5D01G253500.1	EnsemblPlantsGene:TraesCS5D01G253500	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF339	PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	SEG:seg	SMART:SM00385
SMART:SM01332	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:

Description

No Description!

Coordinates

chr5D:-:360368846..360370782

Molecular Weight (calculated)

38918.3 Da

IEP (calculated)

5.426

GRAVY (calculated)

-0.069

Length

362 amino acids

Sequence
(BLAST)

001: MAPSFDMAAS ILLCAEDSSS VFGFGDGEEV EEAKGARAGG SPYCGELAVE FPLPSEECVA RWVATEAEHL PREDYAERLR AGGVDLRVGG VDLRVRVDAV
101: DWIWKVHTYY GFGPVTACLA LNYMDRFLSL YQIPEGKAWM TQLLSVACLS LAAKMDETSV PHSIDLQAGD ARYVFEAKTI QRMELLVLST LKWRMQAVTP
201: FSYLDYFLHQ LSGGNAPSRQ AVREATELIL CISRGTSCLE FRPSEIAATV AAAVAGEEHT AHKPACCTHV DKERVLSCHE AMIRTTGATV PPPKTAGLMG
301: SAYSPAMSAP RSPTGVLDLD AGYLSCPSNG TSTTTTTMAS SPPASSGFDG SPVSSKRRKI SR

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.