Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 3
- endoplasmic reticulum 3
- vacuole 3
- plasma membrane 3
- golgi 3
- nucleus 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6B01G345300.1 | Wheat | plastid | 96.83 | 69.12 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 98.02 | 68.99 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 94.84 | 68.09 |
| EES07560 | Sorghum | nucleus | 75.4 | 53.07 |
| Zm00001d018128_P001 | Maize | nucleus | 74.6 | 52.96 |
| Zm00001d052185_P001 | Maize | nucleus | 75.4 | 52.78 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 50.79 | 36.57 |
| GSMUA_Achr10P... | Banana | nucleus | 45.63 | 35.83 |
| GSMUA_Achr10P... | Banana | nucleus | 48.81 | 35.76 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 50.4 | 35.47 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 48.41 | 35.16 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 48.41 | 35.16 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 48.41 | 34.96 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 46.43 | 33.81 |
| GSMUA_Achr10P... | Banana | nucleus | 47.22 | 33.52 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 46.43 | 33.14 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 46.83 | 32.69 |
| KRH45568 | Soybean | nucleus | 42.86 | 31.21 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 44.05 | 31.18 |
| VIT_18s0001g07220.t01 | Wine grape | nucleus | 43.65 | 30.99 |
| KRH16827 | Soybean | nucleus | 42.86 | 30.42 |
| KRH72435 | Soybean | nucleus | 42.86 | 30.25 |
| TraesCS5D01G253500.1 | Wheat | nucleus | 42.46 | 29.56 |
| TraesCS5D01G253200.1 | Wheat | nucleus | 41.67 | 29.49 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 42.46 | 29.48 |
| Solyc04g076040.2.1 | Tomato | nucleus | 41.27 | 29.3 |
| KRG99448 | Soybean | nucleus | 40.87 | 28.77 |
| TraesCS2D01G171700.1 | Wheat | nucleus | 38.89 | 28.66 |
| PGSC0003DMT400033588 | Potato | nucleus | 40.08 | 28.37 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 27.38 | 27.71 |
| Solyc12g087900.1.1 | Tomato | nucleus | 34.52 | 27.53 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 36.9 | 26.35 |
| KRH74510 | Soybean | nucleus | 37.7 | 26.32 |
| KRH52917 | Soybean | nucleus | 36.51 | 26.14 |
| KRH62196 | Soybean | nucleus | 36.51 | 26.14 |
| PGSC0003DMT400088718 | Potato | nucleus | 32.14 | 26.13 |
| Solyc11g010460.1.1 | Tomato | cytosol | 32.14 | 25.96 |
| PGSC0003DMT400037827 | Potato | nucleus | 34.92 | 25.58 |
| Bra038518.1-P | Field mustard | nucleus | 29.37 | 25.52 |
| CDY13755 | Canola | nucleus | 29.37 | 25.34 |
| Solyc05g051410.2.1 | Tomato | nucleus | 34.52 | 25.29 |
| Bra031858.1-P | Field mustard | nucleus | 29.76 | 25.08 |
| AT5G65420.3 | Thale cress | nucleus | 31.35 | 24.84 |
| CDY08795 | Canola | nucleus | 29.76 | 24.35 |
| CDY37828 | Canola | nucleus | 29.76 | 24.27 |
| CDY33959 | Canola | nucleus | 29.37 | 24.26 |
| Bra024383.1-P | Field mustard | nucleus | 29.37 | 24.03 |
| AT5G10440.1 | Thale cress | nucleus | 28.17 | 23.83 |
| CDY54717 | Canola | nucleus | 25.0 | 23.68 |
| CDX81286 | Canola | nucleus | 24.6 | 23.31 |
| AT2G22490.2 | Thale cress | nucleus | 33.33 | 23.2 |
| CDY14561 | Canola | cytosol | 29.76 | 23.08 |
| KRH69654 | Soybean | cytosol | 22.22 | 23.05 |
| CDX76917 | Canola | nucleus | 32.14 | 22.88 |
| CDX89480 | Canola | nucleus | 32.14 | 22.82 |
| Bra030232.1-P | Field mustard | nucleus | 32.14 | 22.82 |
| CDY25602 | Canola | nucleus | 32.14 | 22.75 |
| Bra037817.1-P | Field mustard | nucleus | 25.4 | 22.7 |
| CDX97009 | Canola | nucleus | 25.79 | 22.18 |
| PGSC0003DMT400041637 | Potato | nucleus | 34.13 | 21.83 |
| Bra009031.1-P | Field mustard | nucleus | 25.4 | 21.55 |
| CDX69832 | Canola | nucleus | 25.0 | 21.21 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 23.41 | 18.85 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 25.0 | 17.17 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 21.83 | 16.32 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 22.22 | 15.91 |
| TraesCS4D01G135100.1 | Wheat | cytosol, nucleus, plastid | 20.63 | 15.43 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 20.24 | 14.83 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 19.05 | 13.56 |
Protein Annotations
| EnsemblPlants:TraesCS6D01G294200.1 | EnsemblPlantsGene:TraesCS6D01G294200 | Gene3D:1.10.472.10 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_N |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | PFAM:PF00134 | ScanProsite:PS00292 | SEG:seg | SMART:SM00385 |
| SUPFAM:SSF47954 | TIGR:cd00043 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr6D:+:405082134..405083285
Molecular Weight (calculated)
26874.9 Da
IEP (calculated)
4.546
GRAVY (calculated)
0.112
Length
252 amino acids
Sequence
(BLAST)
(BLAST)
001: MVPSGYDCAA SVLLCAEDNA AILGLDDDED DCSWAAAAGS ATPPRVAADA AAAAEGFLVD HPVQSDECVA ALVATEKEHM PADGYPQMLL RRAGALDLAA
101: VRRDAIDWIW KVIEHFNFAP LTAVLSVNYL DRFLSVYPLP ELVFRPSEIA ASVALAAFGE RNTSVVERAT TTCKYINKER VLRCYELIQD KIAMGTIVLK
201: SAGSSMFSVP QSPIGVLDAA ACLSQQSDDT AVGSPATCYQ ASSASKRRRI GR
101: VRRDAIDWIW KVIEHFNFAP LTAVLSVNYL DRFLSVYPLP ELVFRPSEIA ASVALAAFGE RNTSVVERAT TTCKYINKER VLRCYELIQD KIAMGTIVLK
201: SAGSSMFSVP QSPIGVLDAA ACLSQQSDDT AVGSPATCYQ ASSASKRRRI GR
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.