Factsheet for GSMUA_Achr6P02210_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 4
plastid 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	nucleus, plastid, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P11790_001
GSMUA_Achr2P22370_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P12510_001
GSMUA_Achr9P27040_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	GSMUA_Achr2P11710_001	AT2G27960.1	20706207
AT5G10440.1	GSMUA_Achr2P11750_001	AT2G27960.1	20706207
AT5G10440.1	GSMUA_Achr2P11710_001	AT2G27970.1	20706207
AT5G10440.1	GSMUA_Achr2P11750_001	AT2G27970.1	20706207
AT5G10440.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr1P00900_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr1P20410_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr2P11790_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr4P26490_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr5P12920_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr5P20430_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr5P21770_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr6P36640_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr8P12510_001	AT2G32710.1	20706207
AT5G10440.1	GSMUA_Achr10P...	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr10P...	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr2P22370_001	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr9P27040_001	AT3G19150.1	20706207
AT5G10440.1	GSMUA_Achr11P...	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr5P22980_001	Banana	nucleus	75.5	53.87
GSMUA_Achr10P...	Banana	nucleus	69.88	50.58
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	72.69	50.56
GSMUA_Achr10P...	Banana	nucleus	64.66	50.16
GSMUA_Achr8P23430_001	Banana	nucleus	67.47	48.41
GSMUA_Achr9P15070_001	Banana	nucleus	67.47	48.0
GSMUA_Achr3P06730_001	Banana	nucleus	65.86	47.26
GSMUA_Achr5P17920_001	Banana	nucleus	64.26	46.24
GSMUA_Achr7P12850_001	Banana	nucleus	66.67	45.98
GSMUA_Achr10P...	Banana	nucleus	63.86	44.79
GSMUA_Achr3P21210_001	Banana	nucleus	60.24	42.49
GSMUA_Achr2P22330_001	Banana	nucleus	60.24	42.13
GSMUA_Achr6P10260_001	Banana	cytosol	60.64	41.6
KRH16827	Soybean	nucleus	58.23	40.85
Bra038518.1-P	Field mustard	nucleus	47.39	40.69
CDY13755	Canola	nucleus	47.39	40.41
VIT_18s0001g07220.t01	Wine grape	nucleus	56.63	39.72
KRH72435	Soybean	nucleus	56.63	39.5
Solyc04g076040.2.1	Tomato	nucleus	56.22	39.44
TraesCS6B01G345300.1	Wheat	plastid	55.82	39.38
HORVU6Hr1G077500.1	Barley	nucleus	55.02	39.03
PGSC0003DMT400033588	Potato	nucleus	55.42	38.76
KRH52917	Soybean	nucleus	54.62	38.64
TraesCS6A01G314900.1	Wheat	nucleus	55.02	38.27
Zm00001d052185_P001	Maize	nucleus	54.62	37.78
KRH62196	Soybean	nucleus	53.01	37.5
Solyc11g010460.1.1	Tomato	cytosol	46.99	37.5
Zm00001d018128_P001	Maize	nucleus	52.61	36.9
EES07560	Sorghum	nucleus	53.01	36.87
KRG99448	Soybean	nucleus	52.21	36.31
KRH45568	Soybean	nucleus	50.2	36.13
VIT_00s0199g00210.t01	Wine grape	nucleus	50.2	35.41
CDX81286	Canola	nucleus	37.75	35.34
KRH74510	Soybean	nucleus	50.6	34.9
AT5G10440.1	Thale cress	nucleus	41.77	34.9
CDY54717	Canola	nucleus	36.95	34.59
PGSC0003DMT400037827	Potato	nucleus	47.39	34.3
Solyc05g051410.2.1	Tomato	nucleus	47.39	34.3
PGSC0003DMT400088718	Potato	nucleus	42.57	34.19
Bra009031.1-P	Field mustard	nucleus	40.56	34.01
CDX69832	Canola	nucleus	40.56	34.01
KXG19603	Sorghum	nucleus	47.39	33.91
Solyc12g087900.1.1	Tomato	nucleus	42.97	33.86
CDX97009	Canola	nucleus	39.76	33.79
KRH69654	Soybean	cytosol	32.53	33.33
AT5G65420.3	Thale cress	nucleus	42.57	33.33
CDX76917	Canola	nucleus	46.99	33.05
Bra037817.1-P	Field mustard	nucleus	37.35	32.98
AT2G22490.2	Thale cress	nucleus	47.79	32.87
CDY08795	Canola	nucleus	40.56	32.79
Bra024383.1-P	Field mustard	nucleus	40.56	32.79
Bra031858.1-P	Field mustard	nucleus	39.36	32.78
CDY33959	Canola	nucleus	39.76	32.46
Bra030232.1-P	Field mustard	nucleus	46.18	32.39
CDY25602	Canola	nucleus	46.18	32.3
CDX89480	Canola	nucleus	45.78	32.11
CDY37828	Canola	nucleus	39.76	32.04
PGSC0003DMT400041637	Potato	nucleus	50.6	31.98
CDY14561	Canola	cytosol	40.96	31.38
GSMUA_Achr9P28180_001	Banana	nucleus	33.73	27.72
TraesCS6D01G294200.1	Wheat	nucleus	27.71	27.38
GSMUA_Achr7P26100_001	Banana	nucleus	39.76	26.98
GSMUA_Achr3P06030_001	Banana	cytosol	31.73	26.69
GSMUA_Achr6P24270_001	Banana	nucleus	32.13	26.32
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	25.7	25.5
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	30.52	25.33
GSMUA_Achr6P16910_001	Banana	cytosol	27.71	24.82
GSMUA_Achr6P07740_001	Banana	nucleus	31.33	24.53
GSMUA_Achr1P22570_001	Banana	nucleus	37.35	24.41
GSMUA_Achr7P19980_001	Banana	nucleus	36.14	23.14
GSMUA_Achr10P...	Banana	nucleus	26.51	23.08
GSMUA_Achr10P...	Banana	cytosol	23.29	22.92
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	22.09	22.73
GSMUA_Achr4P20220_001	Banana	nucleus	32.93	22.65
GSMUA_Achr2P05260_001	Banana	nucleus	30.92	22.32
GSMUA_Achr4P07110_001	Banana	nucleus	28.51	22.19
GSMUA_Achr1P09780_001	Banana	cytosol	34.54	22.16
GSMUA_Achr3P01010_001	Banana	nucleus	34.54	21.13
GSMUA_Achr3P13140_001	Banana	nucleus	33.73	20.64
GSMUA_Achr6P34040_001	Banana	nucleus	22.49	20.36
GSMUA_AchrUn_...	Banana	cytosol	24.9	19.56
GSMUA_Achr9P12120_001	Banana	nucleus	31.33	18.48

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSMUA_Achr6G02210_001	EnsemblPlants:GSMUA_Achr6P02210_001
EnsemblPlants:GSMUA_Achr6T02210_001	UniProt:M0T3G9	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000296D52C	SEG:seg

Description

Cyclin-D3-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G02210_001]

Coordinates

chr6:-:1427146..1428591

Molecular Weight (calculated)

27562.4 Da

IEP (calculated)

7.432

GRAVY (calculated)

0.095

Length

249 amino acids

Sequence
(BLAST)

001: MCHLMSSSSS SSSVHAHYNF GPLTAYVSVN YLDRFLSAYE LPQGKAWMTQ LLAVACLSLA AKMEETDVPL FMDLQVGEAK YVFEAKTIQR MELLVLSTLR
101: WKMQAVTPFS YIDFFLHKFS DGNSPTKLSV SRSAELISST VKDTDFLAFR PSVIAAAIAL LVLRETQMVD VEKKLSCCTH VMKDDVLGCH EVLQNKVLIR
201: QQSIEDVSSS VSSVPQSPLG VLDVACLSYK SDDASLQTSP ACKKRKVSR

Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)

001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q

Arabidopsis Description

CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.