Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- extracellular 2
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- nucleus 4
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr4P20220_001 | Banana | nucleus | 63.64 | 71.55 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 55.77 | 58.51 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 56.76 | 56.76 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 47.91 | 56.52 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.03 | 52.68 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 32.68 | 43.04 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 36.85 | 42.37 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 36.61 | 42.09 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 36.61 | 42.09 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 36.12 | 41.88 |
| Os09t0111100-01 | Rice | cytosol | 37.1 | 41.48 |
| Zm00001d019696_P001 | Maize | cytosol | 39.07 | 41.09 |
| Zm00001d005293_P001 | Maize | cytosol | 38.82 | 40.41 |
| EER96424 | Sorghum | cytosol | 37.59 | 40.05 |
| KRH05626 | Soybean | cytosol | 21.13 | 40.0 |
| PGSC0003DMT400039904 | Potato | nucleus | 31.2 | 39.44 |
| KRH15412 | Soybean | cytosol | 25.8 | 38.89 |
| Solyc12g088650.1.1 | Tomato | nucleus | 30.47 | 38.15 |
| Solyc04g078470.2.1 | Tomato | nucleus | 31.2 | 37.8 |
| PGSC0003DMT400020648 | Potato | nucleus | 30.71 | 37.65 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 35.63 | 37.56 |
| PGSC0003DMT400066557 | Potato | nucleus | 32.43 | 36.87 |
| KRH61348 | Soybean | nucleus | 31.45 | 36.68 |
| Solyc01g107730.2.1 | Tomato | nucleus | 32.68 | 36.54 |
| Solyc02g092980.2.1 | Tomato | nucleus | 32.19 | 36.49 |
| CDY49278 | Canola | nucleus | 32.92 | 36.31 |
| Bra017629.1-P | Field mustard | nucleus | 32.68 | 36.14 |
| CDX72453 | Canola | nucleus | 31.94 | 36.11 |
| VIT_18s0001g09920.t01 | Wine grape | nucleus | 32.92 | 36.02 |
| CDX76265 | Canola | nucleus | 32.19 | 35.89 |
| CDY57741 | Canola | nucleus | 32.19 | 35.89 |
| KRH57973 | Soybean | nucleus | 33.42 | 35.51 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 14.99 | 35.47 |
| PGSC0003DMT400031329 | Potato | nucleus | 28.01 | 35.4 |
| KRH77050 | Soybean | nucleus, plastid | 28.99 | 35.33 |
| PGSC0003DMT400064307 | Potato | nucleus | 31.45 | 35.26 |
| KRH28424 | Soybean | nucleus | 28.99 | 35.22 |
| KRH04529 | Soybean | nucleus | 31.94 | 35.04 |
| PGSC0003DMT400068629 | Potato | cytosol | 20.64 | 35.0 |
| Bra034612.1-P | Field mustard | nucleus | 31.45 | 34.78 |
| KRH52038 | Soybean | nucleus | 30.71 | 34.53 |
| Bra011501.1-P | Field mustard | nucleus | 31.45 | 34.32 |
| CDX75405 | Canola | nucleus | 31.45 | 34.32 |
| AT4G34160.1 | Thale cress | nucleus | 31.7 | 34.31 |
| CDY01425 | Canola | nucleus | 29.48 | 33.9 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 20.64 | 33.73 |
| CDY30607 | Canola | nucleus | 29.24 | 33.71 |
| CDY69708 | Canola | nucleus | 30.96 | 33.69 |
| Bra012146.1-P | Field mustard | nucleus | 29.24 | 33.62 |
| CDY17742 | Canola | nucleus | 29.24 | 33.52 |
| CDY12825 | Canola | nucleus | 29.48 | 33.52 |
| Bra036051.1-P | Field mustard | nucleus | 28.99 | 33.43 |
| KRG90996 | Soybean | nucleus | 32.19 | 33.33 |
| Bra029992.1-P | Field mustard | nucleus | 28.5 | 32.95 |
| CDX83112 | Canola | nucleus | 28.5 | 32.95 |
| Bra012909.1-P | Field mustard | nucleus | 26.54 | 32.93 |
| CDY02095 | Canola | nucleus | 26.54 | 32.93 |
| KRH35760 | Soybean | nucleus | 32.43 | 32.84 |
| CDX68573 | Canola | nucleus | 28.26 | 32.67 |
| Solyc02g064900.1.1 | Tomato | nucleus | 27.52 | 32.37 |
| CDY23022 | Canola | nucleus | 26.04 | 32.22 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 23.59 | 31.68 |
| Solyc02g064860.1.1 | Tomato | nucleus | 18.18 | 31.49 |
| Solyc02g064910.1.1 | Tomato | nucleus | 17.94 | 31.06 |
| AT3G50070.1 | Thale cress | nucleus | 27.52 | 31.02 |
| GSMUA_Achr10P... | Banana | nucleus | 24.08 | 30.53 |
| VIT_00s0194g00280.t01 | Wine grape | mitochondrion | 21.38 | 30.53 |
| AT5G67260.2 | Thale cress | nucleus | 29.98 | 30.2 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 25.8 | 30.0 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 18.43 | 29.88 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 25.31 | 29.68 |
| PGSC0003DMT400068627 | Potato | nucleus | 22.11 | 29.22 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 21.13 | 29.05 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 21.38 | 29.0 |
| PGSC0003DMT400011487 | Potato | nucleus | 13.02 | 28.8 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 21.87 | 27.99 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 20.88 | 27.96 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 23.83 | 27.95 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 24.57 | 27.93 |
| GSMUA_Achr10P... | Banana | nucleus | 24.32 | 27.89 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 24.57 | 27.7 |
| GSMUA_Achr10P... | Banana | nucleus | 23.34 | 27.62 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 24.57 | 27.55 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 23.59 | 27.51 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 23.34 | 27.46 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 23.59 | 26.97 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 23.1 | 26.63 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 15.72 | 26.45 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 23.83 | 26.43 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 24.57 | 26.25 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 17.2 | 25.18 |
| GSMUA_Achr10P... | Banana | cytosol | 15.48 | 24.9 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 16.71 | 24.73 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 23.1 | 24.16 |
| GSMUA_Achr10P... | Banana | nucleus | 16.95 | 24.13 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 17.69 | 22.5 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 20.64 | 19.91 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | ncoils:Coil | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr3G13140_001 |
| EnsemblPlants:GSMUA_Achr3P13140_001 | EnsemblPlants:GSMUA_Achr3T13140_001 | UniProt:M0SE81 | PFAM:PF00134 | PFAM:PF02984 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF342 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002969722 | SEG:seg |
Description
cyclin, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr3G13140_001]
Coordinates
chr3:-:9638469..9639861
Molecular Weight (calculated)
43780.9 Da
IEP (calculated)
4.659
GRAVY (calculated)
-0.075
Length
407 amino acids
Sequence
(BLAST)
(BLAST)
001: MALLSLLDLL YCREESLELE EDEERAEPTL PLLEDRETER HVLSAAEEEA EEEWAEVLCS LAAKEGEALR ELVLDGGGSY LRSARKEAVE WVTRTAATHD
101: FSALTALLAV NYLDRCFLSR AAGGRLLRLQ DDKPWMGRLA AVACLSLAAK VEETHVPLLL DLQVPAPVEA VAEEGGFLFE PKTIRRMEFL VLAALGWRMN
201: PVTPLSFIDH LLPRLFPKDN SANTGSAPVG IAARTRQLVR RCQAALLSVI ADWRWVGYPA SAWAAAALLQ ATESGDGGGT TAESPGTRHL ISLLNAPKET
301: LGECHQLILE STGTGVIGHK RKQSSSAFCR CSSPPSPSGV IGSCFSCGSS CDSWATWPSS APSSPEVPPP FKRLHGSSID ESFGEEGVSD EGVGPVSVLS
401: ITSRGYA
101: FSALTALLAV NYLDRCFLSR AAGGRLLRLQ DDKPWMGRLA AVACLSLAAK VEETHVPLLL DLQVPAPVEA VAEEGGFLFE PKTIRRMEFL VLAALGWRMN
201: PVTPLSFIDH LLPRLFPKDN SANTGSAPVG IAARTRQLVR RCQAALLSVI ADWRWVGYPA SAWAAAALLQ ATESGDGGGT TAESPGTRHL ISLLNAPKET
301: LGECHQLILE STGTGVIGHK RKQSSSAFCR CSSPPSPSGV IGSCFSCGSS CDSWATWPSS APSSPEVPPP FKRLHGSSID ESFGEEGVSD EGVGPVSVLS
401: ITSRGYA
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
Arabidopsis Description
CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.