Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX75405 | Canola | nucleus | 85.11 | 85.79 |
| Bra011501.1-P | Field mustard | nucleus | 84.84 | 85.52 |
| CDY57741 | Canola | nucleus | 82.98 | 85.48 |
| Bra034612.1-P | Field mustard | nucleus | 83.51 | 85.33 |
| CDY69708 | Canola | nucleus | 84.57 | 85.03 |
| CDX76265 | Canola | nucleus | 82.45 | 84.93 |
| Bra017629.1-P | Field mustard | nucleus | 82.45 | 84.24 |
| CDX72453 | Canola | nucleus | 80.59 | 84.17 |
| CDY49278 | Canola | nucleus | 82.45 | 84.01 |
| VIT_07s0129g01100.t01 | Wine grape | nucleus | 46.28 | 56.31 |
| PGSC0003DMT400066557 | Potato | nucleus | 50.53 | 53.07 |
| KRG90996 | Soybean | nucleus | 53.99 | 51.65 |
| Solyc01g107730.2.1 | Tomato | nucleus | 50.0 | 51.65 |
| VIT_03s0180g00040.t01 | Wine grape | nucleus | 52.93 | 51.55 |
| KRH35760 | Soybean | nucleus | 52.66 | 49.25 |
| AT3G50070.1 | Thale cress | nucleus | 43.09 | 44.88 |
| AT5G67260.2 | Thale cress | nucleus | 45.21 | 42.08 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 34.57 | 33.51 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 29.26 | 31.88 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 30.59 | 31.77 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 34.31 | 31.7 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 29.26 | 31.34 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 29.26 | 31.07 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 28.99 | 30.79 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 28.99 | 30.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.27 | 29.97 |
| Os09t0111100-01 | Rice | cytosol | 28.46 | 29.4 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 31.38 | 28.99 |
| AT5G65420.3 | Thale cress | nucleus | 24.47 | 28.93 |
| AT1G70210.1 | Thale cress | nucleus | 25.8 | 28.61 |
| AT5G10440.1 | Thale cress | nucleus | 22.07 | 27.85 |
| Zm00001d019696_P001 | Maize | cytosol | 28.46 | 27.65 |
| AT2G22490.2 | Thale cress | nucleus | 26.6 | 27.62 |
| EER96424 | Sorghum | cytosol | 27.93 | 27.49 |
| Zm00001d005293_P001 | Maize | cytosol | 28.19 | 27.11 |
| AT4G37630.1 | Thale cress | nucleus | 22.87 | 26.63 |
| AT4G03270.1 | Thale cress | nucleus | 18.62 | 23.18 |
| AT5G02110.1 | Thale cress | cytosol | 18.62 | 20.53 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:829564 | ProteinID:AEE86335.1 | EMBL:AK221712 | ArrayExpress:AT4G34160 |
| EnsemblPlantsGene:AT4G34160 | RefSeq:AT4G34160 | TAIR:AT4G34160 | RefSeq:AT4G34160-TAIR-G | EnsemblPlants:AT4G34160.1 | TAIR:AT4G34160.1 |
| ProteinID:CAA17556.1 | ProteinID:CAB80133.1 | Symbol:CYCD3;1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0000003 | GO:GO:0000082 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0009719 | GO:GO:0009735 | GO:GO:0009744 | GO:GO:0009791 | GO:GO:0009987 |
| GO:GO:0010444 | GO:GO:0030154 | GO:GO:0048316 | GO:GO:0051301 | RefSeq:NP_195142.1 | UniProt:P42753 |
| PFAM:PF00134 | PFAM:PF02984 | PO:PO:0000013 | PO:PO:0000015 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0005660 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0020148 | PO:PO:0025022 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF351 |
| SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0000162B8C | EMBL:X83371 | SEG:seg |
Description
CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
Coordinates
chr4:+:16357421..16359565
Molecular Weight (calculated)
42703.8 Da
IEP (calculated)
4.625
GRAVY (calculated)
-0.251
Length
376 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.