Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY22116 | Canola | nucleus | 81.46 | 82.55 |
| CDY21951 | Canola | nucleus | 82.45 | 82.45 |
| Bra034198.1-P | Field mustard | nucleus | 81.13 | 82.21 |
| CDX90892 | Canola | nucleus | 35.1 | 69.74 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 47.68 | 48.98 |
| PGSC0003DMT400039033 | Potato | nucleus | 46.03 | 44.69 |
| Solyc07g054950.1.1 | Tomato | nucleus | 45.36 | 44.19 |
| KRH22479 | Soybean | cytosol | 45.36 | 43.35 |
| KRH26876 | Soybean | nucleus | 45.03 | 43.17 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 33.11 | 39.84 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 39.74 | 39.47 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 42.72 | 39.21 |
| KRH25470 | Soybean | nucleus | 42.05 | 39.2 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 36.42 | 36.67 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 28.15 | 35.12 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 27.81 | 33.47 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 32.12 | 30.99 |
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 31.79 | 30.97 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 31.46 | 30.94 |
| EER99528 | Sorghum | cytosol | 31.79 | 30.57 |
| Os07t0556000-01 | Rice | cytosol | 32.12 | 30.31 |
| TraesCS2B01G234800.1 | Wheat | cytosol, nucleus, plasma membrane | 32.78 | 29.03 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 38.74 | 27.73 |
| AT5G10440.1 | Thale cress | nucleus | 25.17 | 25.5 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 13.58 | 24.85 |
| AT5G65420.3 | Thale cress | nucleus | 26.16 | 24.84 |
| AT1G70210.1 | Thale cress | nucleus | 27.15 | 24.19 |
| AT2G22490.2 | Thale cress | nucleus | 25.17 | 20.99 |
| AT3G50070.1 | Thale cress | nucleus | 24.5 | 20.5 |
| AT4G34160.1 | Thale cress | nucleus | 23.18 | 18.62 |
| AT5G67260.2 | Thale cress | nucleus | 24.5 | 18.32 |
| AT4G37630.1 | Thale cress | nucleus | 19.54 | 18.27 |
| AT5G02110.1 | Thale cress | cytosol | 16.23 | 14.37 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:828000 | ProteinID:AAD14455.1 | ProteinID:AEE82300.1 | ArrayExpress:AT4G03270 |
| EnsemblPlantsGene:AT4G03270 | RefSeq:AT4G03270 | TAIR:AT4G03270 | RefSeq:AT4G03270-TAIR-G | EnsemblPlants:AT4G03270.1 | TAIR:AT4G03270.1 |
| ProteinID:CAB77812.1 | Symbol:CYCD6;1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_D_plant |
| InterPro:Cyclin_N | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 |
| GO:GO:0051726 | RefSeq:NP_192236.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PO:PO:0000037 |
| PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0004507 | PO:PO:0007611 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009031 | PO:PO:0009046 | PO:PO:0020100 | PO:PO:0025022 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF188 |
| UniProt:Q9ZR04 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00000A12EA | SEG:seg |
Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
Coordinates
chr4:-:1431844..1433861
Molecular Weight (calculated)
34670.2 Da
IEP (calculated)
5.789
GRAVY (calculated)
-0.246
Length
302 amino acids
Sequence
(BLAST)
(BLAST)
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.