Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- plasma membrane 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G208300.1 | Wheat | nucleus, peroxisome, plasma membrane | 89.74 | 98.71 |
| TraesCS2D01G215000.3 | Wheat | cytosol, nucleus, plasma membrane | 89.44 | 97.44 |
| HORVU0Hr1G003280.5 | Barley | cytosol, mitochondrion, nucleus | 69.21 | 94.02 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 70.09 | 77.85 |
| EER99528 | Sorghum | cytosol | 71.55 | 77.71 |
| Os07t0556000-01 | Rice | cytosol | 71.55 | 76.25 |
| HORVU7Hr1G117300.3 | Barley | cytosol | 34.31 | 70.91 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 41.94 | 47.04 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 38.71 | 44.0 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 31.96 | 43.43 |
| VIT_12s0134g00500.t01 | Wine grape | nucleus | 34.6 | 40.14 |
| Bra034198.1-P | Field mustard | nucleus | 31.96 | 36.58 |
| CDY22116 | Canola | nucleus | 31.96 | 36.58 |
| Solyc02g079370.2.1 | Tomato | nucleus | 31.67 | 36.36 |
| KRH10729 | Soybean | nucleus | 28.74 | 36.03 |
| PGSC0003DMT400057686 | Potato | cytosol, nucleus, plasma membrane | 31.67 | 36.0 |
| KRH26876 | Soybean | nucleus | 33.14 | 35.87 |
| KRH22479 | Soybean | cytosol | 32.84 | 35.44 |
| CDY21951 | Canola | nucleus | 31.09 | 35.1 |
| KRH21593 | Soybean | nucleus | 27.86 | 34.93 |
| VIT_00s0203g00160.t01 | Wine grape | cytosol | 31.67 | 34.18 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 42.23 | 34.12 |
| PGSC0003DMT400039033 | Potato | nucleus | 30.21 | 33.12 |
| CDX90892 | Canola | nucleus | 14.66 | 32.89 |
| AT4G03270.1 | Thale cress | nucleus | 29.03 | 32.78 |
| PGSC0003DMT400012934 | Potato | nucleus | 28.74 | 32.34 |
| Solyc07g054950.1.1 | Tomato | nucleus | 29.03 | 31.94 |
| Solyc03g006670.2.1 | Tomato | nucleus | 28.74 | 31.51 |
| KRH56054 | Soybean | cytosol, nucleus, plasma membrane | 29.62 | 30.7 |
| KRH25470 | Soybean | nucleus | 29.03 | 30.56 |
| TraesCS6B01G345300.1 | Wheat | plastid | 28.15 | 27.2 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 25.22 | 26.88 |
| TraesCS5B01G243900.1 | Wheat | nucleus | 25.81 | 24.79 |
| TraesCS5B01G244100.1 | Wheat | nucleus | 25.22 | 23.89 |
| TraesCS2B01G190700.1 | Wheat | nucleus | 23.46 | 23.26 |
| TraesCS4B01G140400.1 | Wheat | cytosol, nucleus, plastid | 22.29 | 22.89 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 19.94 | 20.24 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 19.94 | 19.21 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 17.6 | 18.18 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 18.48 | 17.9 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_D_plant |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 |
| GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051726 | PFAM:PF00134 | PFAM:PF02984 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF240 | SUPFAM:SSF47954 | EnsemblPlantsGene:TraesCS2B01G234800 | EnsemblPlants:TraesCS2B01G234800.1 | TIGR:cd00043 | SEG:seg |
Description
No Description!
Coordinates
chr2B:+:234084957..234087075
Molecular Weight (calculated)
36924.2 Da
IEP (calculated)
6.403
GRAVY (calculated)
0.039
Length
341 amino acids
Sequence
(BLAST)
(BLAST)
001: MDMPGEDEYV YGYEYEFDLE NPFTSPADEP IASLLDAEAH HAPSVSAAAS AVRRDAARFI SKVRYDGELA VHPRVAYLAL NYVDRFLSKG QLPVRSRKMV
101: SFFQESTIFR SDLTPRGSAA QFERKPWAPR LLAISCLSIA AKMQRVDAIS MDYIQRDEEF MFDAVTIRRM ERVVLGALEW RARSVTPLAF LGFFLSACFP
201: PPRHPALLDA VKERAVDLLL RAQPEVKMAE FSPSVVAASA LLAAAGEIAV AHLPAFQAAV AACPFVNSEK LRECGEVMAA VCGVVGVGVG VGPAASADTP
301: VTVLGHGHYR SASSESDRTV GSAANVADAK KRCMGPPSQW G
101: SFFQESTIFR SDLTPRGSAA QFERKPWAPR LLAISCLSIA AKMQRVDAIS MDYIQRDEEF MFDAVTIRRM ERVVLGALEW RARSVTPLAF LGFFLSACFP
201: PPRHPALLDA VKERAVDLLL RAQPEVKMAE FSPSVVAASA LLAAAGEIAV AHLPAFQAAV AACPFVNSEK LRECGEVMAA VCGVVGVGVG VGPAASADTP
301: VTVLGHGHYR SASSESDRTV GSAANVADAK KRCMGPPSQW G
001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY
Arabidopsis Description
CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.