CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92238
KRH11866
KRH13310
KRH20664
KRH25124
KRH30550
KRH36887
KRH42252
KRH47306
KRH58370
KRH63701

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	KRH25124	AT2G27960.1	20706207
AT4G03270.1	KRH30550	AT2G27960.1	20706207
AT4G03270.1	KRG92238	AT2G32710.1	20706207
AT4G03270.1	KRH13310	AT3G12280.1	22921914
AT4G03270.1	KRH20664	AT3G12280.1	22921914
AT4G03270.1	KRH63701	AT3G12280.1	22921914
AT4G03270.1	KRH11866	AT3G48750.1	20706207
AT4G03270.1	KRH36887	AT3G48750.1	20706207
AT4G03270.1	KRH42252	AT3G48750.1	20706207
AT4G03270.1	KRH58370	AT3G48750.1	20706207
AT4G03270.1	KRH47306	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22479	Soybean	cytosol	97.46	97.15
KRH25470	Soybean	nucleus	65.71	63.89
KRH56054	Soybean	cytosol, nucleus, plasma membrane	66.35	63.53
VIT_12s0134g00500.t01	Wine grape	nucleus	52.7	56.46
PGSC0003DMT400039033	Potato	nucleus	49.21	49.84
Solyc07g054950.1.1	Tomato	nucleus	48.25	49.03
KRH10729	Soybean	nucleus	40.0	46.32
KRH21593	Soybean	nucleus	40.0	46.32
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	36.19	45.42
AT4G03270.1	Thale cress	nucleus	43.17	45.03
GSMUA_Achr6P24270_001	Banana	nucleus	42.54	44.08
Bra034198.1-P	Field mustard	nucleus	41.59	43.96
CDY22116	Canola	nucleus	41.59	43.96
CDY21951	Canola	nucleus	41.27	43.05
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	39.05	41.0
CDX90892	Canola	nucleus	19.37	40.13
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	30.48	39.67
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	30.16	37.85
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	35.24	35.81
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	35.56	35.78
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	33.02	33.88
EER99528	Sorghum	cytosol	33.65	33.76
Os07t0556000-01	Rice	cytosol	33.97	33.44
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	35.87	33.14
GSMUA_Achr9P12120_001	Banana	nucleus	42.86	31.99
KRH72435	Soybean	nucleus	32.06	28.29
KRH16827	Soybean	nucleus	31.43	27.89
HORVU7Hr1G117300.3	Barley	cytosol	14.29	27.27
KRH52917	Soybean	nucleus	29.84	26.7
KRH69476	Soybean	nucleus	28.25	26.25
KRH28424	Soybean	nucleus	27.62	25.97
KRH35652	Soybean	nucleus	24.44	25.5
KRH62196	Soybean	nucleus	28.25	25.28
KRH77050	Soybean	nucleus, plastid	26.67	25.15
KRH69654	Soybean	cytosol	19.37	25.1
KRH45743	Soybean	nucleus	28.25	24.72
KRG99255	Soybean	nucleus	27.3	24.71
KRG91131	Soybean	nucleus	25.4	24.69
KRH74510	Soybean	nucleus	27.62	24.1
KRH45568	Soybean	nucleus	26.35	23.99
KRH52092	Soybean	nucleus	23.49	23.57
KRH61407	Soybean	nucleus	23.17	23.4
KRG99448	Soybean	nucleus	26.35	23.18
KRH74675	Soybean	nucleus, plastid	27.3	22.51
KRH75669	Soybean	cytosol	20.63	22.49
KRH04529	Soybean	nucleus	26.35	22.37
KRH05626	Soybean	cytosol	15.24	22.33
KRH28363	Soybean	nucleus	22.86	21.75
KRH57973	Soybean	nucleus	26.35	21.67
KRH77118	Soybean	nucleus	22.54	21.39
KRH58137	Soybean	nucleus	21.59	21.38
KRH65892	Soybean	cytosol	19.37	21.18
KRG90996	Soybean	nucleus	25.08	20.1
KRH04404	Soybean	vacuole	21.59	20.0
KRH54628	Soybean	cytosol	9.52	19.61
KRH54622	Soybean	cytosol	9.52	19.61
KRH61348	Soybean	nucleus	21.27	19.2
KRH35760	Soybean	nucleus	24.13	18.91
KRH15412	Soybean	cytosol	16.19	18.89
KRH52038	Soybean	nucleus	21.59	18.78

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100811659	MapMan:13.1.1.1.4	EMBL:ACUP02007755	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N	EnsemblPlantsGene:GLYMA_12G199300	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051726
UniProt:I1LUB2	EnsemblPlants:KRH26876	ProteinID:KRH26876	ProteinID:KRH26876.1	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF188	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000233C43E

Description

hypothetical protein

Coordinates

chr12:-:36059718..36062396

Molecular Weight (calculated)

35832.8 Da

IEP (calculated)

5.577

GRAVY (calculated)

-0.111

Length

315 amino acids

Sequence
(BLAST)

001: MDFDLENPLG NFHDLPCDAV PSLFLIESDH IPPPNYCQSF KASDFDISVR RDVVSLISQL SCTFDPVLPY LAINYLDRFL AHQGILQPKP WANKLLAISC
101: FSLAAKMLKT EYSATDVQVL MNHGDGGAIF EAQTIQRMEG IVLGALQWRM RSITPFSFIP FFVNLFRLKD PALRQVLKDG ASEIILKSQR EIKVLEFKPS
201: TVAASALLYA SHELFPFQYP CFLRAISDCS YINKETVVQC YNVIHDITRE EYESVLNINS TSDTPVNVLD EHFLSLESEK TNGTNVVTQE QDFKRRKTTD
301: YGNNRTVPFS HFHQC

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.