CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX73827
CDX76164
CDX79470
CDX83047
CDX84726
CDX87018
CDY00765
CDY05870
CDY08440
CDY12181
CDY13189
CDY19160
CDY23793
CDY42141
CDY50559
CDY52391
CDY52614
CDY59640
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	CDX79470	AT2G32710.1	20706207
AT4G03270.1	CDX84726	AT2G32710.1	20706207
AT4G03270.1	CDY12181	AT2G32710.1	20706207
AT4G03270.1	CDY19160	AT2G32710.1	20706207
AT4G03270.1	CDY23793	AT2G32710.1	20706207
AT4G03270.1	CDY59640	AT2G32710.1	20706207
AT4G03270.1	CDX73827	AT3G12280.1	22921914
AT4G03270.1	CDY00765	AT3G12280.1	22921914
AT4G03270.1	CDY08440	AT3G12280.1	22921914
AT4G03270.1	CDY42141	AT3G12280.1	22921914
AT4G03270.1	CDY50559	AT3G12280.1	22921914
AT4G03270.1	CDY52391	AT3G12280.1	22921914
AT4G03270.1	CDY52614	AT3G12280.1	22921914
AT4G03270.1	CDX68497	AT3G48750.1	20706207
AT4G03270.1	CDX83047	AT3G48750.1	20706207
AT4G03270.1	CDX87018	AT3G48750.1	20706207
AT4G03270.1	CDY05870	AT3G48750.1	20706207
AT4G03270.1	CDY66197	AT3G48750.1	20706207
AT4G03270.1	CDY67496	AT3G48750.1	20706207
AT4G03270.1	CDX76164	AT3G54180.1	22921914
AT4G03270.1	CDY13189	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21951	Canola	nucleus	95.64	94.37
AT4G03270.1	Thale cress	nucleus	82.55	81.46
CDX90892	Canola	nucleus	35.57	69.74
VIT_12s0134g00500.t01	Wine grape	nucleus	44.97	45.58
PGSC0003DMT400039033	Potato	nucleus	44.63	42.77
KRH22479	Soybean	cytosol	44.3	41.77
Solyc07g054950.1.1	Tomato	nucleus	43.29	41.61
KRH26876	Soybean	nucleus	43.96	41.59
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	34.23	40.64
GSMUA_Achr6P24270_001	Banana	nucleus	41.28	40.46
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	38.93	38.67
KRH56054	Soybean	cytosol, nucleus, plasma membrane	41.95	37.99
KRH25470	Soybean	nucleus	41.28	37.96
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	31.54	37.45
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	27.85	34.3
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	34.9	33.88
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	35.57	33.87
EER99528	Sorghum	cytosol	35.57	33.76
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	34.9	33.55
Os07t0556000-01	Rice	cytosol	34.56	32.19
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	36.58	31.96
GSMUA_Achr9P12120_001	Banana	nucleus	40.94	28.91
CDY54717	Canola	nucleus	24.16	27.07
CDY11608	Canola	nucleus	28.19	26.5
CDY38800	Canola	nucleus	28.19	26.33
CDX81286	Canola	nucleus	23.49	26.32
CDY13755	Canola	nucleus	25.17	25.68
CDY67142	Canola	nucleus	29.19	25.66
HORVU7Hr1G117300.3	Barley	cytosol	14.09	25.45
CDX97009	Canola	nucleus	24.83	25.26
CDX69832	Canola	nucleus	25.17	25.25
CDY37828	Canola	nucleus	25.5	24.6
CDY33959	Canola	nucleus	25.17	24.59
CDY59943	Canola	nucleus	28.86	23.82
CDY08795	Canola	nucleus	24.5	23.7
CDX89480	Canola	nucleus	28.19	23.66
CDY25602	Canola	nucleus	27.85	23.31
CDY14561	Canola	cytosol	24.5	22.46
CDX76917	Canola	nucleus	25.84	21.75
CDY30607	Canola	nucleus	23.49	19.83
CDY17742	Canola	nucleus	23.49	19.72
CDX83112	Canola	nucleus	23.15	19.6
CDY02095	Canola	nucleus	21.48	19.51
CDY23022	Canola	nucleus	21.48	19.45
CDY12825	Canola	nucleus	23.15	19.27
CDX72453	Canola	nucleus	23.15	19.17
CDX68573	Canola	nucleus	22.48	19.03
CDY01425	Canola	nucleus	22.48	18.93
CDX76265	Canola	nucleus	22.82	18.63
CDX75405	Canola	nucleus	23.15	18.5
CDY69708	Canola	nucleus	23.15	18.45
CDY57741	Canola	nucleus	22.48	18.36
CDY49278	Canola	nucleus	22.48	18.16
CDY30606	Canola	cytosol, nucleus, plastid	10.4	18.02
CDY10467	Canola	cytosol	18.79	16.52
CDX72643	Canola	nucleus	18.79	16.47
CDY29570	Canola	nucleus	18.46	16.47
CDY55121	Canola	cytosol	18.79	16.33
CDY40332	Canola	cytosol	18.12	15.88
CDX80803	Canola	cytosol	18.79	12.42

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	GO:A0A078G9P8	UniProt:A0A078G9P8	EnsemblPlants:CDY22116	ProteinID:CDY22116
ProteinID:CDY22116.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049	GO:GO:0008150
GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSBRNA2T00018504001	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771
PANTHER:PTHR10177	PANTHER:PTHR10177:SF188	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI0004EECEC9
SEG:seg	:	:	:	:	:

Description

BnaA09g01450DBnaA09g01450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9P8]

Coordinates

chrLK032127:-:616834..618533

Molecular Weight (calculated)

33851.5 Da

IEP (calculated)

6.122

GRAVY (calculated)

-0.204

Length

298 amino acids

Sequence
(BLAST)

001: MEFHLEHPLS HSPSIHNNND VALPPNSLFL VEPQHMPSPH YFHTLKSSAS LLSNRNHAVS SIIQYSRKLD DPSLTYLAVN YLDRFLSSED MMPQSKPWIL
101: KLISLSCVSL SAKMRKPDIS VCDLPVEGEM FDAQMIERME NVILGALKWR MRSVTPFSFL SFFLSLLFEL EEDHSVLKHS LKAQATDLTF SLQHDIKFLE
201: FKPSVVAAAA LLFASSEICP QQFPCFSNRI CQCTYVNKDE LMECYKAMQE RDVVEDNEGS NDTAVNVLDQ QFSSCEESAI TASSPKRRKI TTSTSRRC

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.