Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra024383.1-P | Field mustard | nucleus | 99.03 | 99.03 |
| CDY14561 | Canola | cytosol | 93.51 | 88.62 |
| CDY54717 | Canola | nucleus | 69.48 | 80.45 |
| CDX81286 | Canola | nucleus | 68.51 | 79.32 |
| AT5G65420.3 | Thale cress | nucleus | 81.82 | 79.25 |
| CDY33959 | Canola | nucleus | 73.38 | 74.1 |
| CDY37828 | Canola | nucleus | 74.03 | 73.79 |
| CDX69832 | Canola | nucleus | 61.36 | 63.64 |
| CDX97009 | Canola | nucleus | 60.39 | 63.48 |
| CDY13755 | Canola | nucleus | 42.53 | 44.86 |
| Solyc11g010460.1.1 | Tomato | cytosol | 44.48 | 43.91 |
| PGSC0003DMT400037827 | Potato | nucleus | 48.05 | 43.02 |
| Solyc05g051410.2.1 | Tomato | nucleus | 47.4 | 42.44 |
| KRH69654 | Soybean | cytosol | 33.44 | 42.39 |
| KRH45568 | Soybean | nucleus | 46.1 | 41.04 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 32.79 | 40.56 |
| CDY25602 | Canola | nucleus | 46.75 | 40.45 |
| VIT_00s0199g00210.t01 | Wine grape | nucleus | 46.1 | 40.23 |
| KRH74510 | Soybean | nucleus | 47.08 | 40.17 |
| CDX89480 | Canola | nucleus | 46.1 | 40.0 |
| KRG99448 | Soybean | nucleus | 46.1 | 39.66 |
| CDX76917 | Canola | nucleus | 45.45 | 39.55 |
| GSMUA_Achr10P... | Banana | nucleus | 40.58 | 38.94 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 43.51 | 38.62 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 43.83 | 38.57 |
| GSMUA_Achr10P... | Banana | nucleus | 42.21 | 37.79 |
| PGSC0003DMT400041637 | Potato | nucleus | 48.05 | 37.56 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 42.53 | 37.54 |
| TraesCS6B01G345300.1 | Wheat | plastid | 42.86 | 37.39 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 41.88 | 37.28 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 41.88 | 37.18 |
| HORVU6Hr1G077500.1 | Barley | nucleus | 42.21 | 37.04 |
| Zm00001d018128_P001 | Maize | nucleus | 42.53 | 36.9 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 42.86 | 36.87 |
| Zm00001d052185_P001 | Maize | nucleus | 42.86 | 36.67 |
| TraesCS6A01G314900.1 | Wheat | nucleus | 42.21 | 36.31 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 41.56 | 35.46 |
| EES07560 | Sorghum | nucleus | 40.58 | 34.92 |
| KXG19603 | Sorghum | nucleus | 37.34 | 33.05 |
| CDY11608 | Canola | nucleus | 31.49 | 30.6 |
| TraesCS6D01G294200.1 | Wheat | nucleus | 24.35 | 29.76 |
| CDY38800 | Canola | nucleus | 30.52 | 29.47 |
| CDY67142 | Canola | nucleus | 31.82 | 28.91 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 15.58 | 27.91 |
| CDY59943 | Canola | nucleus | 30.84 | 26.32 |
| CDY17742 | Canola | nucleus | 29.55 | 25.63 |
| CDY30607 | Canola | nucleus | 29.22 | 25.5 |
| CDX83112 | Canola | nucleus | 28.9 | 25.28 |
| CDX68573 | Canola | nucleus | 28.57 | 25.0 |
| CDY02095 | Canola | nucleus | 26.62 | 25.0 |
| CDY22116 | Canola | nucleus | 23.7 | 24.5 |
| CDX76265 | Canola | nucleus | 28.9 | 24.38 |
| CDY23022 | Canola | nucleus | 25.97 | 24.32 |
| CDY57741 | Canola | nucleus | 28.57 | 24.11 |
| CDY21951 | Canola | nucleus | 23.38 | 23.84 |
| CDX72453 | Canola | nucleus | 27.6 | 23.61 |
| CDY49278 | Canola | nucleus | 28.25 | 23.58 |
| CDY69708 | Canola | nucleus | 28.57 | 23.53 |
| CDY12825 | Canola | nucleus | 27.27 | 23.46 |
| CDY01425 | Canola | nucleus | 26.95 | 23.45 |
| CDX75405 | Canola | nucleus | 28.25 | 23.32 |
| CDY29570 | Canola | nucleus | 24.03 | 22.16 |
| CDX72643 | Canola | nucleus | 24.35 | 22.06 |
| CDX90892 | Canola | nucleus | 10.06 | 20.39 |
| CDY10467 | Canola | cytosol | 22.4 | 20.35 |
| CDY40332 | Canola | cytosol | 22.08 | 20.0 |
| CDY55121 | Canola | cytosol | 20.78 | 18.66 |
| CDX80803 | Canola | cytosol | 21.1 | 14.41 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078F2Q4 | UniProt:A0A078F2Q4 | EnsemblPlants:CDY08795 | ProteinID:CDY08795 |
| ProteinID:CDY08795.1 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00000737001 | PFAM:PF00134 | PFAM:PF02984 |
| PIRSF:PIRSF001771 | ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF337 | SMART:SM00385 | SMART:SM01332 |
| SUPFAM:SSF47954 | UniParc:UPI0004EF08EF | SEG:seg | : | : | : |
Description
BnaA06g24290DBnaA06g24290D protein [Source:UniProtKB/TrEMBL;Acc:A0A078F2Q4]
Coordinates
chrLK031989:+:464645..466955
Molecular Weight (calculated)
34832.9 Da
IEP (calculated)
4.994
GRAVY (calculated)
-0.076
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MADNLELSLL CTEITNVGDE DNVIILDKAP IVFPEISISQ MGFPSESDEF IREMMEKEKQ LLPSDGYISR LRSGDFDLNV RRREALNWIL KACEEHQFGP
101: MCICLSMNYL DRFLSVHDFP SGNTWAVQLL AVACLSLAAK IEETEVPMLI DLQAGHPQFV FEAKSVQRME LLVLNRLEWR LRAITPCSYI RYFLRKMSKC
201: DQEPSSTLIS RSFQVIASKT KGIDFLEFRP SEVAAAVALS VSGELYTVHF DNSSFSPLFS LLQKERVKKI GEMIERCESQ TPNGVLEVSA CCFSSKTHDS
301: SSPHTHLS
101: MCICLSMNYL DRFLSVHDFP SGNTWAVQLL AVACLSLAAK IEETEVPMLI DLQAGHPQFV FEAKSVQRME LLVLNRLEWR LRAITPCSYI RYFLRKMSKC
201: DQEPSSTLIS RSFQVIASKT KGIDFLEFRP SEVAAAVALS VSGELYTVHF DNSSFSPLFS LLQKERVKKI GEMIERCESQ TPNGVLEVSA CCFSSKTHDS
301: SSPHTHLS
001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS
Arabidopsis Description
CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.