CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
EER91497
EER95545
EER99015
EES04403
KXG40187
KXG40336

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G10440.1	KXG40187	AT2G27960.1	20706207
AT5G10440.1	KXG40187	AT2G27970.1	20706207
AT5G10440.1	EER91497	AT2G32710.1	20706207
AT5G10440.1	EER95545	AT2G32710.1	20706207
AT5G10440.1	EER99015	AT3G19150.1	20706207
AT5G10440.1	EES04403	AT3G48750.1	20706207
AT5G10440.1	KXG40336	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES07560	Sorghum	nucleus	52.3	50.84
GSMUA_Achr6P02210_001	Banana	plastid	33.91	47.39
GSMUA_Achr5P17920_001	Banana	nucleus	45.69	45.95
GSMUA_Achr10P...	Banana	nucleus	42.24	45.79
GSMUA_Achr10P...	Banana	nucleus	44.83	45.35
GSMUA_Achr3P06730_001	Banana	nucleus	45.11	45.24
GSMUA_Achr9P15070_001	Banana	nucleus	45.4	45.14
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	45.98	44.69
GSMUA_Achr8P23430_001	Banana	nucleus	44.54	44.67
GSMUA_Achr3P21210_001	Banana	nucleus	45.11	44.48
GSMUA_Achr5P22980_001	Banana	nucleus	44.25	44.13
KRH69654	Soybean	cytosol	29.89	42.8
CDY54717	Canola	nucleus	32.18	42.11
EER96886	Sorghum	nucleus	45.69	42.06
GSMUA_Achr10P...	Banana	nucleus	42.82	41.97
CDX81286	Canola	nucleus	31.9	41.73
GSMUA_Achr2P22330_001	Banana	nucleus	42.24	41.29
GSMUA_Achr7P12850_001	Banana	nucleus	42.53	41.0
GSMUA_Achr6P10260_001	Banana	cytosol	42.53	40.77
EES14027	Sorghum	nucleus	43.1	40.21
Bra037817.1-P	Field mustard	nucleus	32.18	39.72
KRH16827	Soybean	nucleus	40.23	39.44
EER97558	Sorghum	nucleus	39.08	39.42
Bra038518.1-P	Field mustard	nucleus	32.76	39.31
Solyc11g010460.1.1	Tomato	cytosol	35.06	39.1
CDY13755	Canola	nucleus	32.76	39.04
Bra031858.1-P	Field mustard	nucleus	33.05	38.46
KRH72435	Soybean	nucleus	39.08	38.1
CDY33959	Canola	nucleus	33.33	38.03
Solyc04g076040.2.1	Tomato	nucleus	38.79	38.03
VIT_18s0001g07220.t01	Wine grape	nucleus	38.51	37.75
AT5G65420.3	Thale cress	nucleus	34.48	37.74
KRH45568	Soybean	nucleus	37.36	37.57
KRG99448	Soybean	nucleus	38.51	37.43
CDY08795	Canola	nucleus	33.05	37.34
CDY37828	Canola	nucleus	33.05	37.22
PGSC0003DMT400033588	Potato	nucleus	37.93	37.08
Bra024383.1-P	Field mustard	nucleus	32.76	37.01
PGSC0003DMT400037827	Potato	nucleus	36.49	36.92
KRH74510	Soybean	nucleus	38.22	36.84
Solyc05g051410.2.1	Tomato	nucleus	36.21	36.63
AT2G22490.2	Thale cress	nucleus	37.64	36.19
KRH52917	Soybean	nucleus	36.49	36.08
Solyc12g087900.1.1	Tomato	nucleus	32.76	36.08
Bra030232.1-P	Field mustard	nucleus	36.78	36.06
VIT_00s0199g00210.t01	Wine grape	nucleus	36.49	35.98
CDY25602	Canola	nucleus	36.78	35.96
CDX89480	Canola	nucleus	36.49	35.77
AT5G10440.1	Thale cress	nucleus	30.46	35.57
KRH62196	Soybean	nucleus	35.63	35.23
CDY14561	Canola	cytosol	32.47	34.77
CDX76917	Canola	nucleus	35.34	34.75
Bra009031.1-P	Field mustard	nucleus	29.6	34.68
PGSC0003DMT400088718	Potato	nucleus	30.75	34.52
CDX97009	Canola	nucleus	29.02	34.47
CDX69832	Canola	nucleus	29.31	34.34
OQU92473	Sorghum	nucleus	33.91	34.1
OQU89443	Sorghum	nucleus	30.17	31.53
PGSC0003DMT400041637	Potato	nucleus	35.63	31.47
EER99528	Sorghum	cytosol	22.99	25.48
EER92677	Sorghum	nucleus	23.56	23.1
EES17294	Sorghum	nucleus	23.28	22.31
EER91226	Sorghum	nucleus	22.99	21.62
EER96424	Sorghum	cytosol	22.7	20.68
OQU84124	Sorghum	nucleus	23.56	19.2

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	UniProt:A0A194YI25	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlants:KXG19603
ProteinID:KXG19603	ProteinID:KXG19603.1	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF337	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3010G086000	SUPFAM:SSF47954
UniParc:UPI0007F1C0BD	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:+:7392734..7395076

Molecular Weight (calculated)

38818.7 Da

IEP (calculated)

4.792

GRAVY (calculated)

0.048

Length

348 amino acids

Sequence
(BLAST)

001: MTPRFDFAAS VLLCSEDSTT IFDLEEEEER EGISCVLRPP PRHANAPSGA LSIDFPLQSE SCIEAYLVRE EHHLPMEGYA DRLLLQQPGG SDLVAIRNSA
101: IDWIWKVHEY YKLGPLTVVL SVNYMDRFLS VYHNALEKDW MTQLLTVACL SLAAKMEETI VFNPLDLQVV DAEYVFEPNT IHTMEILVLN TLSWRMQAVT
201: PCSFIDYYLH KFSDGDVSEI ILSRAVELIL STSKVAELLV FRPSEVAASI ALVALGKHDS SVLESVATCR KELRKERVLG CYKIVQDKIV MGDIIIKSDG
301: SSLFPKQHSP TGVLGVVACE SQQSEEISAG APVCNESSSA CKRRRICR

Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)

001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q

Arabidopsis Description

CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.