CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050475_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	73.46	88.67
Zm00001d031837_P001	Maize	nucleus	77.48	68.16
Os08t0479300-01	Rice	nucleus	63.54	61.88
EER96886	Sorghum	nucleus	61.66	60.85
EES07560	Sorghum	nucleus	46.92	48.88
EER97558	Sorghum	nucleus	40.75	44.06
KXG19603	Sorghum	nucleus	40.21	43.1
OQU92473	Sorghum	nucleus	37.8	40.75
OQU89443	Sorghum	nucleus	30.03	33.63
EER91226	Sorghum	nucleus	26.27	26.49
EES17294	Sorghum	nucleus	24.93	25.62
EER99528	Sorghum	cytosol	21.45	25.48
EER96424	Sorghum	cytosol	26.01	25.39
EER92677	Sorghum	nucleus	23.86	25.07
OQU84124	Sorghum	nucleus	22.52	19.67

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EntrezGene:8056911	UniProt:C5YMN9	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	EnsemblPlants:EES14027	ProteinID:EES14027	ProteinID:EES14027.1	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	PFAM:PF00134	ScanProsite:PS00292	PANTHER:PTHR10177
PANTHER:PTHR10177:SF339	SMART:SM00385	SMART:SM01332	EnsemblPlantsGene:SORBI_3007G160300	SUPFAM:SSF47954	unigene:Sbi.2665
UniParc:UPI0001A87AE3	RefSeq:XP_002444532.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:59490876..59494505

Molecular Weight (calculated)

40449.8 Da

IEP (calculated)

4.614

GRAVY (calculated)

-0.124

Length

373 amino acids

Sequence
(BLAST)

001: MAPSCYDVAA SMLLCAEEHS SILCFEEEEE EELQVVGRKR ARSPEPDYGD DFGVDLFPPQ SEECVAGLVE KEREHMPRSD YGERLRGGGG DGIDLCVRRE
101: AIDWIWKVYT YYNFRPLTAY LAVNYLDRFL SRYELPDGKD WMTQLLSVAC VSLAAKMEET AVPQSLDLQV GDARYVFEAK TIQRMELLVL STLNWRMQAV
201: TPFSYMDYFL NKLNGGNAAP RSWFFQSAEL ILCAARGTCC IGFRPSEIAA AVAAAVVVGE GNVAGIENAC LHVDKERVLL CQDAIQSMSM ASSAIDTVPP
301: KSASGSGRTS TSSPVPVPWS PVGVLDAAGC LSYKSEDDAA GAAATVAAAS HGASGSSSSS PPVTSKRRKL TSR

Best Arabidopsis Sequence Match ( AT2G22490.1 )
(BLAST)

001: MAENLACGET SESWIIDNDD DDINYGGGFT NEIDYNHQLF AKDDNFGGNG SIPMMGSSSS SLSEDRIKEM LVREIEFCPG TDYVKRLLSG DLDLSVRNQA
101: LDWILKVCAH YHFGHLCICL SMNYLDRFLT SYELPKDKDW AAQLLAVSCL SLASKMEETD VPHIVDLQVE DPKFVFEAKT IKRMELLVVT TLNWRLQALT
201: PFSFIDYFVD KISGHVSENL IYRSSRFILN TTKAIEFLDF RPSEIAAAAA VSVSISGETE CIDEEKALSS LIYVKQERVK RCLNLMRSLT GEENVRGTSL
301: SQEQARVAVR AVPASPVGVL EATCLSYRSE ERTVESCTNS SQSSPDNNNN NNNSNKRRRK Q

Arabidopsis Description

CYCD2;1Cyclin D21 [Source:UniProtKB/TrEMBL;Acc:F4IJJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.