Factsheet for Os08t0479300-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d050475_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	53.79	66.67
EES14027	Sorghum	nucleus	61.88	63.54
Os09t0466100-01	Rice	nucleus	55.61	59.83
Zm00001d031837_P001	Maize	nucleus	59.27	53.54
Os03t0392000-00	Rice	cytosol, nucleus, plastid	27.68	43.09
Os07t0620800-01	Rice	nucleus	39.16	42.13
Os09t0382300-00	Rice	nucleus	29.77	37.01
Os07t0556000-01	Rice	cytosol	22.98	27.5
Os06t0236600-00	Rice	nucleus	25.07	26.45
Os12t0588800-01	Rice	nucleus	24.28	25.48
Os09t0111100-01	Rice	cytosol	24.02	25.27
Os03t0617500-01	Rice	cytosol, nucleus	23.76	24.2
Os11t0706801-00	Rice	nucleus	20.1	24.06
Os03t0203800-01	Rice	nucleus	21.15	23.48

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	EntrezGene:4345844	ProteinID:AAT72758.1	ProteinID:AAT72759.1	ProteinID:AAT72760.1
ProteinID:AAT72761.1	ProteinID:AAT72762.1	ProteinID:AAT72763.1	ProteinID:AAV65960.1	ProteinID:AAV66348.1	ProteinID:AAV69066.1
EMBL:AK070025	ProteinID:BAD09749.1	ProteinID:BAF23968.1	ProteinID:BAT05907.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_C-dom	InterPro:Cyclin_N	ProteinID:EAZ43092.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051301	EnsemblPlantsGene:Os08g0479300
EnsemblPlants:Os08t0479300-01	PFAM:PF00134	PFAM:PF02984	ScanProsite:PS00292	PANTHER:PTHR10177	PANTHER:PTHR10177:SF213
UniProt:Q4KYM5	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000023AF02	RefSeq:XP_015648876.1
SEG:seg	:	:	:	:	:

Description

CYCLIN-D4-2Cyclin, A/B/D/E domain containing protein. (Os08t0479300-01)

Coordinates

chr8:+:23648009..23651073

Molecular Weight (calculated)

41661.9 Da

IEP (calculated)

4.675

GRAVY (calculated)

-0.243

Length

383 amino acids

Sequence
(BLAST)

001: MAPSSSSCHD AAASMLLCAE DNSSILWLED EEGEVGERRS GGCRSMVGDL AAGGGGGSGG GGVEEEEDMF PRQSEECVAS LVEREQAHMP RADYGERLRG
101: GGGDVDLRVR SEAIGWIWEV YTYYNFSSVT AYLAVNYLDR FLSQYELPEG RDWMTQLLSV ACLSIAAKME ETVVPQCLDL QIGEPRFLFE VETIHRMELL
201: VLTNLNWRMQ AVTPFSYIDY FLRKLNSGNA APRSWLLRSS ELILRIAAGT GFLEFRPSEI AAAVAATVAG EATGVVEEDI AEAFTHVDKG RVLQCQEAIQ
301: DHHYSMATIN TVQPKPASTR RGSASASSSS VPESPVAVLD AGCLSYKSDD TDAATIASHG GGRRKSCFDS SPVTSKKRRK LSR

Best Arabidopsis Sequence Match ( AT5G65420.1 )
(BLAST)

001: MAEENLELSL LCTESNVDDE GMIVDETPIE ISIPQMGFSQ SESEEIIMEM VEKEKQHLPS DDYIKRLRSG DLDLNVGRRD ALNWIWKACE VHQFGPLCFC
101: LAMNYLDRFL SVHDLPSGKG WILQLLAVAC LSLAAKIEET EVPMLIDLQV GDPQFVFEAK SVQRMELLVL NKLKWRLRAI TPCSYIRYFL RKMSKCDQEP
201: SNTLISRSLQ VIASTTKGID FLEFRPSEVA AAVALSVSGE LQRVHFDNSS FSPLFSLLQK ERVKKIGEMI ESDGSDLCSQ TPNGVLEVSA CCFSFKTHDS
301: SSSYTHLS

Arabidopsis Description

CYCD4;1CYCLIN D41 [Source:UniProtKB/TrEMBL;Acc:F4KHY3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.