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Rice
Subcellular Localization
min:
: max

 
Winner_takes_all: nucleus

Predictor Summary:
  • nucleus 5
  • mitochondrion 1
  • plastid 1
PPI

Inferred distinct locusB in Crop

Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
VIT_01s0026g00710.t01 Wine grape nucleus 40.77 45.68
Os09t0382300-00 Rice nucleus 38.57 45.45
GSMUA_Achr9P28180_001 Banana nucleus 37.47 44.88
KRG99255 Soybean nucleus 40.5 42.24
GSMUA_Achr3P06030_001 Banana cytosol 34.44 42.23
KRH69476 Soybean nucleus 39.39 42.18
Solyc05g006050.2.1 Tomato nucleus 39.12 42.14
PGSC0003DMT400040287 Potato nucleus 38.84 41.96
CDY11608 Canola nucleus 36.09 41.32
CDY38800 Canola nucleus 35.81 40.75
KRH45743 Soybean nucleus 39.67 40.0
Bra007901.1-P Field mustard nucleus 36.91 39.53
CDY67142 Canola nucleus 36.91 39.53
AT1G70210.1 Thale cress nucleus 36.36 38.94
KRH74675 Soybean nucleus, plastid 40.22 38.22
CDY59943 Canola nucleus 37.47 37.67
GSMUA_Achr7P19980_001 Banana nucleus 34.16 31.88
Os03t0392000-00 Rice cytosol, nucleus, plastid 20.66 30.49
Os09t0466100-01 Rice nucleus 26.45 26.97
Os07t0620800-01 Rice nucleus 25.34 25.84
Os08t0479300-01 Rice nucleus 26.45 25.07
Os07t0556000-01 Rice cytosol 20.94 23.75
Os03t0617500-01 Rice cytosol, nucleus 23.42 22.61
Os03t0203800-01 Rice nucleus 19.83 20.87
Os12t0588800-01 Rice nucleus 20.94 20.82
Os11t0706801-00 Rice nucleus 18.18 20.62
Os09t0111100-01 Rice cytosol 19.01 18.96
Protein Annotations
Gene3D:1.10.472.10MapMan:13.1.1.1.4EntrezGene:9271619ProteinID:BAD37938.1ProteinID:BAS96960.1InterPro:Cyclin-like
InterPro:Cyclin-like_sfInterPro:Cyclin_C-domInterPro:Cyclin_NProteinID:EAZ36408.1GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005634GO:GO:0007049GO:GO:0008150GO:GO:0009987GO:GO:0051301
EnsemblPlantsGene:Os06g0236600EnsemblPlants:Os06t0236600-00PFAM:PF00134PFAM:PF02984PANTHER:PTHR10177PANTHER:PTHR10177:SF206
UniProt:Q67V81SMART:SM00385SMART:SM01332SUPFAM:SSF47954UniParc:UPI00004263F7RefSeq:XP_015642748.1
SEG:seg:::::
Description
CYCLIN-D1-2Cyclin-D1-1. (Os06t0236600-00)
Coordinates
chr6:-:7102964..7106821
Molecular Weight (calculated)
39252.2 Da
IEP (calculated)
4.796
GRAVY (calculated)
-0.074
Length
363 amino acids
Sequence
(BLAST)
001: MMYKHVGDDA RGSSAGVVCC VDVVDDDVDA LLCGEDAGEL EREGEPAQGS SPSSSLSCAA AAAAAADDDD EDEDEHGVHG EVVQVTPGGE EHCYDYDYDV
101: DVPVGAELVM PACSPPRTAV HRPGWSESVS WILKVRSVHG FQPATAYLAV SYMDRFMSSR SLPDHGWASQ LLCVACLSLA AKMEESSAPP LLDLQIEGTR
201: FIFEPRTIQR MELIVLVELD WRLRSVTPFA FVDFFACKVG SSGRSSRILA LRACQIILSA IHELEFLNHC ASSMAAAAVL FAVNESPAAM SHRSSVSSES
301: AASWCIGLTE ERISSCYQLL QRALNATARK RKRHPMILAA CSSVTSSSSR SKRRKLDGHF GED
Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.