Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
- plastid 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
locusB | locations |
---|---|
Os01t0897000-01 | |
Os02t0123100-01 | |
Os08t0512600-01 |
Inferred from Arabidopsis experimental PPI
Ath locusA | locusB | Ath locusB | Paper |
---|---|---|---|
AT1G70210.1 | Os08t0512600-01 | AT1G76540.1 | 12857813 |
AT1G70210.1 | Os02t0123100-01 | AT3G48750.1 | 12857813 |
AT1G70210.1 | Os01t0897000-01 | AT3G54180.1 | 12857813 |
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
VIT_01s0026g00710.t01 | Wine grape | nucleus | 40.77 | 45.68 |
Os09t0382300-00 | Rice | nucleus | 38.57 | 45.45 |
GSMUA_Achr9P28180_001 | Banana | nucleus | 37.47 | 44.88 |
KRG99255 | Soybean | nucleus | 40.5 | 42.24 |
GSMUA_Achr3P06030_001 | Banana | cytosol | 34.44 | 42.23 |
KRH69476 | Soybean | nucleus | 39.39 | 42.18 |
Solyc05g006050.2.1 | Tomato | nucleus | 39.12 | 42.14 |
PGSC0003DMT400040287 | Potato | nucleus | 38.84 | 41.96 |
CDY11608 | Canola | nucleus | 36.09 | 41.32 |
CDY38800 | Canola | nucleus | 35.81 | 40.75 |
KRH45743 | Soybean | nucleus | 39.67 | 40.0 |
Bra007901.1-P | Field mustard | nucleus | 36.91 | 39.53 |
CDY67142 | Canola | nucleus | 36.91 | 39.53 |
AT1G70210.1 | Thale cress | nucleus | 36.36 | 38.94 |
KRH74675 | Soybean | nucleus, plastid | 40.22 | 38.22 |
CDY59943 | Canola | nucleus | 37.47 | 37.67 |
GSMUA_Achr7P19980_001 | Banana | nucleus | 34.16 | 31.88 |
Os03t0392000-00 | Rice | cytosol, nucleus, plastid | 20.66 | 30.49 |
Os09t0466100-01 | Rice | nucleus | 26.45 | 26.97 |
Os07t0620800-01 | Rice | nucleus | 25.34 | 25.84 |
Os08t0479300-01 | Rice | nucleus | 26.45 | 25.07 |
Os07t0556000-01 | Rice | cytosol | 20.94 | 23.75 |
Os03t0617500-01 | Rice | cytosol, nucleus | 23.42 | 22.61 |
Os03t0203800-01 | Rice | nucleus | 19.83 | 20.87 |
Os12t0588800-01 | Rice | nucleus | 20.94 | 20.82 |
Os11t0706801-00 | Rice | nucleus | 18.18 | 20.62 |
Os09t0111100-01 | Rice | cytosol | 19.01 | 18.96 |
Protein Annotations
Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | EntrezGene:9271619 | ProteinID:BAD37938.1 | ProteinID:BAS96960.1 | InterPro:Cyclin-like |
InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | ProteinID:EAZ36408.1 | GO:GO:0005575 | GO:GO:0005622 |
GO:GO:0005623 | GO:GO:0005634 | GO:GO:0007049 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0051301 |
EnsemblPlantsGene:Os06g0236600 | EnsemblPlants:Os06t0236600-00 | PFAM:PF00134 | PFAM:PF02984 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 |
UniProt:Q67V81 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI00004263F7 | RefSeq:XP_015642748.1 |
SEG:seg | : | : | : | : | : |
Description
CYCLIN-D1-2Cyclin-D1-1. (Os06t0236600-00)
Coordinates
chr6:-:7102964..7106821
Molecular Weight (calculated)
39252.2 Da
IEP (calculated)
4.796
GRAVY (calculated)
-0.074
Length
363 amino acids
Sequence
(BLAST)
(BLAST)
001: MMYKHVGDDA RGSSAGVVCC VDVVDDDVDA LLCGEDAGEL EREGEPAQGS SPSSSLSCAA AAAAAADDDD EDEDEHGVHG EVVQVTPGGE EHCYDYDYDV
101: DVPVGAELVM PACSPPRTAV HRPGWSESVS WILKVRSVHG FQPATAYLAV SYMDRFMSSR SLPDHGWASQ LLCVACLSLA AKMEESSAPP LLDLQIEGTR
201: FIFEPRTIQR MELIVLVELD WRLRSVTPFA FVDFFACKVG SSGRSSRILA LRACQIILSA IHELEFLNHC ASSMAAAAVL FAVNESPAAM SHRSSVSSES
301: AASWCIGLTE ERISSCYQLL QRALNATARK RKRHPMILAA CSSVTSSSSR SKRRKLDGHF GED
101: DVPVGAELVM PACSPPRTAV HRPGWSESVS WILKVRSVHG FQPATAYLAV SYMDRFMSSR SLPDHGWASQ LLCVACLSLA AKMEESSAPP LLDLQIEGTR
201: FIFEPRTIQR MELIVLVELD WRLRSVTPFA FVDFFACKVG SSGRSSRILA LRACQIILSA IHELEFLNHC ASSMAAAAVL FAVNESPAAM SHRSSVSSES
301: AASWCIGLTE ERISSCYQLL QRALNATARK RKRHPMILAA CSSVTSSSSR SKRRKLDGHF GED
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.