CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX76164
CDX83047
CDX87018
CDX87588
CDX88294
CDY05870
CDY13189
CDY46075
CDY63966
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G70210.1	CDX87588	AT1G76540.1	12857813
AT1G70210.1	CDX88294	AT1G76540.1	12857813
AT1G70210.1	CDY46075	AT2G23430.1	12569402
AT1G70210.1	CDY63966	AT2G23430.1	12569402
AT1G70210.1	CDX68497	AT3G48750.1	12857813
AT1G70210.1	CDX83047	AT3G48750.1	12857813
AT1G70210.1	CDX87018	AT3G48750.1	12857813
AT1G70210.1	CDY05870	AT3G48750.1	12857813
AT1G70210.1	CDY66197	AT3G48750.1	12857813
AT1G70210.1	CDY67496	AT3G48750.1	12857813
AT1G70210.1	CDX76164	AT3G54180.1	12857813
AT1G70210.1	CDY13189	AT3G54180.1	12857813

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11608	Canola	nucleus	95.92	96.53
CDY67142	Canola	nucleus	87.77	82.6
AT1G70210.1	Thale cress	nucleus	84.95	79.94
CDY59943	Canola	nucleus	88.71	78.39
VIT_01s0026g00710.t01	Wine grape	nucleus	64.26	63.27
KRH69476	Soybean	nucleus	61.76	58.11
Solyc05g006050.2.1	Tomato	nucleus	60.81	57.57
PGSC0003DMT400040287	Potato	nucleus	59.56	56.55
KRG99255	Soybean	nucleus	61.44	56.32
KRH45743	Soybean	nucleus	60.5	53.61
KRH74675	Soybean	nucleus, plastid	61.13	51.05
Os09t0382300-00	Rice	nucleus	43.57	45.13
TraesCS5A01G200500.2	Wheat	nucleus	45.14	44.44
OQU89443	Sorghum	nucleus	46.4	44.44
TraesCS5B01G199100.1	Wheat	nucleus	44.51	44.38
GSMUA_Achr3P06030_001	Banana	cytosol	41.07	44.26
GSMUA_Achr9P28180_001	Banana	nucleus	41.38	43.56
TraesCS5D01G206200.1	Wheat	nucleus	45.77	39.78
HORVU5Hr1G059770.2	Barley	nucleus	44.51	39.78
GSMUA_Achr7P19980_001	Banana	nucleus	45.45	37.28
Zm00001d020353_P001	Maize	nucleus	37.93	36.56
Os06t0236600-00	Rice	nucleus	40.75	35.81
CDY13755	Canola	nucleus	31.66	34.59
CDY54717	Canola	nucleus	28.84	34.59
CDX81286	Canola	nucleus	28.53	34.21
CDX97009	Canola	nucleus	29.47	32.08
CDX69832	Canola	nucleus	29.78	31.99
CDY37828	Canola	nucleus	29.78	30.74
CDY08795	Canola	nucleus	29.47	30.52
CDY33959	Canola	nucleus	29.15	30.49
CDX76917	Canola	nucleus	33.54	30.23
CDY02095	Canola	nucleus	31.03	30.18
CDY14561	Canola	cytosol	30.72	30.15
CDY23022	Canola	nucleus	31.03	30.09
CDY17742	Canola	nucleus	33.23	29.86
CDY30606	Canola	cytosol, nucleus, plastid	15.99	29.65
CDX83112	Canola	nucleus	32.6	29.55
CDY30607	Canola	nucleus	32.6	29.46
CDX89480	Canola	nucleus	32.6	29.3
CDY25602	Canola	nucleus	32.6	29.21
CDX68573	Canola	nucleus	31.97	28.98
CDY22116	Canola	nucleus	26.33	28.19
CDX72453	Canola	nucleus	31.66	28.06
CDY49278	Canola	nucleus	32.29	27.91
CDY01425	Canola	nucleus	30.41	27.4
CDY12825	Canola	nucleus	30.72	27.37
CDY21951	Canola	nucleus	25.71	27.15
CDY57741	Canola	nucleus	31.03	27.12
CDX76265	Canola	nucleus	31.03	27.12
CDY69708	Canola	nucleus	31.35	26.74
CDX75405	Canola	nucleus	31.03	26.54
CDX90892	Canola	nucleus	12.23	25.66
CDY29570	Canola	nucleus	24.76	23.65
CDY10467	Canola	cytosol	24.76	23.3
CDY40332	Canola	cytosol	24.76	23.24
CDX72643	Canola	nucleus	24.45	22.94
CDY55121	Canola	cytosol	23.82	22.16
CDX80803	Canola	cytosol	23.82	16.85

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	GO:A0A078HJW0	UniProt:A0A078HJW0	EnsemblPlants:CDY38800	ProteinID:CDY38800
ProteinID:CDY38800.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00066604001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF206	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954
UniParc:UPI0004EF3384	SEG:seg	:	:	:	:

Description

BnaA07g28720DBnaA07g28720D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HJW0]

Coordinates

chrLK032432:+:296253..298929

Molecular Weight (calculated)

35822.4 Da

IEP (calculated)

4.892

GRAVY (calculated)

-0.131

Length

319 amino acids

Sequence
(BLAST)

001: MDLFCGESSS GESTAEFSSE EVESWPDDSI ASCIEDERHF VPGLDYLSRF HSQSLDASAR EESTVLFVWL QVQAYYSFQP LTAYLAVNYM DRFLYARRLP
101: ETSGWPMQLL AVACLSLAAK MEEVLVPSLF DFQVEGVKYI FEAKTIQRME LLVLDVLDWR LRSVTPFSFL SFFAYKIDPL GTSLGFFRSH ATEIILSNIK
201: EASFLEYKPS SIAAAAILCV ANELPSLSSA ANSHDSPETW CDGLSKEKIV RCYKLMKAMA IENNRRNSPR VIAKLRVSVR AASTLMRPSD ESSSSSSSPS
301: KRRKLSDYSW VGDDKSSSE

Best Arabidopsis Sequence Match ( AT1G70210.1 )
(BLAST)

001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN

Arabidopsis Description

CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.