CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68497
CDX69600
CDX70546
CDX77145
CDX78564
CDX83047
CDX87018
CDY04845
CDY05870
CDY10460
CDY30517
CDY40340
CDY42582
CDY48103
CDY50122
CDY58407
CDY66197
CDY67496

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	CDX77145	AT2G27970.1	20706207
AT5G02110.1	CDY30517	AT2G27970.1	20706207
AT5G02110.1	CDX68497	AT3G48750.1	20706207
AT5G02110.1	CDX83047	AT3G48750.1	20706207
AT5G02110.1	CDX87018	AT3G48750.1	20706207
AT5G02110.1	CDY05870	AT3G48750.1	20706207
AT5G02110.1	CDY66197	AT3G48750.1	20706207
AT5G02110.1	CDY67496	AT3G48750.1	20706207
AT5G02110.1	CDY04845	AT5G02220.1	20706207
AT5G02110.1	CDY10460	AT5G02220.1	20706207
AT5G02110.1	CDY40340	AT5G02220.1	20706207
AT5G02110.1	CDY48103	AT5G02220.1	20706207
AT5G02110.1	CDX69600	AT5G14170.1	20706207
AT5G02110.1	CDX70546	AT5G14170.1	20706207
AT5G02110.1	CDX78564	AT5G14170.1	20706207
AT5G02110.1	CDY58407	AT5G14170.1	20706207
AT5G02110.1	CDY42582	AT5G40460.1	20706207
AT5G02110.1	CDY50122	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra005708.1-P	Field mustard	cytosol	98.83	98.83
CDY10467	Canola	cytosol	77.26	78.17
CDY40332	Canola	cytosol	76.38	77.06
CDX80803	Canola	cytosol	86.01	65.41
AT5G02110.1	Thale cress	cytosol	64.43	64.81
KRH75669	Soybean	cytosol	30.9	36.68
KRH65892	Soybean	cytosol	30.32	36.11
VIT_08s0007g00790.t01	Wine grape	nucleus	33.24	33.73
KRH54628	Soybean	cytosol	14.87	33.33
KRH54622	Soybean	cytosol	14.87	33.33
GSMUA_Achr10P...	Banana	cytosol	22.74	30.83
GSMUA_Achr6P34040_001	Banana	nucleus	21.57	26.91
TraesCS4A01G177400.1	Wheat	cytosol	25.36	26.13
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	24.78	25.6
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	24.49	24.93
CDY11608	Canola	nucleus	22.74	24.61
CDY38800	Canola	nucleus	22.16	23.82
Os11t0706801-00	Rice	nucleus	22.16	23.75
CDY67142	Canola	nucleus	22.45	22.71
CDY13755	Canola	nucleus	19.24	22.6
CDY54717	Canola	nucleus	17.2	22.18
CDY30606	Canola	cytosol, nucleus, plastid	11.08	22.09
CDY02095	Canola	nucleus	20.99	21.95
CDY01425	Canola	nucleus	22.45	21.75
CDY17742	Canola	nucleus	22.45	21.69
CDY23022	Canola	nucleus	20.7	21.58
CDY30607	Canola	nucleus	22.16	21.53
CDX81286	Canola	nucleus	16.62	21.43
CDX83112	Canola	nucleus	21.87	21.31
CDY12825	Canola	nucleus	21.87	20.95
CDX97009	Canola	nucleus	17.78	20.82
CDY08795	Canola	nucleus	18.66	20.78
CDY59943	Canola	nucleus	21.87	20.78
CDX68573	Canola	nucleus	21.28	20.74
CDY25602	Canola	nucleus	21.28	20.51
OQU84124	Sorghum	nucleus	25.36	20.37
CDX76917	Canola	nucleus	20.99	20.34
CDX89480	Canola	nucleus	20.99	20.28
CDX76265	Canola	nucleus	21.57	20.27
Zm00001d048594_P001	Maize	cytosol	25.07	20.24
CDX69832	Canola	nucleus	17.49	20.2
CDY57741	Canola	nucleus	20.99	19.73
CDY14561	Canola	cytosol	18.66	19.69
CDX72453	Canola	nucleus	20.12	19.17
CDY49278	Canola	nucleus	20.41	18.97
CDY22116	Canola	nucleus	16.33	18.79
CDX75405	Canola	nucleus	20.41	18.77
CDY69708	Canola	nucleus	20.41	18.72
CDX90892	Canola	nucleus	8.16	18.42
CDY33959	Canola	nucleus	16.33	18.36
CDY21951	Canola	nucleus	16.04	18.21
CDY37828	Canola	nucleus	16.04	17.8
CDY29570	Canola	nucleus	14.58	14.97
CDX72643	Canola	nucleus	14.58	14.71

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	GO:A0A078IXW3	UniProt:A0A078IXW3	EnsemblPlants:CDY55121	ProteinID:CDY55121
ProteinID:CDY55121.1	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	EnsemblPlantsGene:GSBRNA2T00016419001	PFAM:PF00134	PFAM:PF02984
PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF215	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0004EF353D
SEG:seg	:	:	:	:	:

Description

BnaA03g54990DBnaA03g54990D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IXW3]

Coordinates

chrLK033376:+:38619..40464

Molecular Weight (calculated)

39123.4 Da

IEP (calculated)

5.285

GRAVY (calculated)

-0.120

Length

343 amino acids

Sequence
(BLAST)

001: MDNLLCDESW LSDPLTPEPV PNFRLNIHDD HVVMSPGIDA ATVEEAISID LEKESCFSNH GHKFVEFLAS KKLIDARFRT VQWLIQTRSR LNLSFETLFS
101: AANCFDRFVN VISCDEWSKW MVELVAVTSL SVASKFNDVA SPSPQELQME GLTHMFHHKT VLEMELILLK ALDWRVNSVT SLSFSQILMT KMGIVVGDIM
201: MNRITEHLLD DLCDLKMLGY APSVVAVAAM WTVLEEKSAL EENFGKIMNL FGQEQKENIA KCINVMKSRN VEKGWGRKVS EVKSLVSVLQ RGDMMNMNDV
301: YNGGDLSAIF QILRSEGINK KRDRDYYEDK FRPAKRMTFV MSD

Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)

001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I

Arabidopsis Description

CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.