Factsheet for TraesCS4A01G177400.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, plasma membrane
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plasma membrane
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G281500.1
TraesCS2B01G298800.1
TraesCS2D01G280300.1
TraesCS3A01G361000.1
TraesCS3B01G393400.1
TraesCS3D01G354800.1
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G347600.1
TraesCS5A01G482300.1
TraesCS5A01G521700.1
TraesCS5B01G495400.1
TraesCS5D01G495900.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	TraesCS4A01G410900.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4B01G311000.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4D01G308900.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4A01G410900.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4B01G311000.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4D01G308900.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4B01G353600.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS4D01G347600.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS5A01G521700.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS6A01G078200.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS6B01G105100.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS3A01G361000.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS3B01G393400.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS3D01G354800.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5A01G482300.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5B01G495400.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5D01G495900.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS2A01G281500.1	AT5G14170.1	20706207
AT5G02110.1	TraesCS2B01G298800.1	AT5G14170.1	20706207
AT5G02110.1	TraesCS2D01G280300.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	95.2	95.48
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	95.8	94.66
Os11t0706801-00	Rice	nucleus	51.35	53.44
GSMUA_Achr10P...	Banana	cytosol	34.23	45.06
OQU84124	Sorghum	nucleus	56.76	44.26
GSMUA_Achr6P34040_001	Banana	nucleus	36.04	43.64
Zm00001d048594_P001	Maize	cytosol	53.45	41.88
VIT_08s0007g00790.t01	Wine grape	nucleus	30.93	30.47
KRH65892	Soybean	cytosol	24.32	28.12
KRH75669	Soybean	cytosol	24.02	27.68
KRH54622	Soybean	cytosol	12.61	27.45
KRH54628	Soybean	cytosol	12.61	27.45
TraesCS5A01G200500.2	Wheat	nucleus	26.13	26.85
TraesCS5A01G246800.1	Wheat	nucleus	27.03	25.5
CDY55121	Canola	cytosol	26.13	25.36
Bra005708.1-P	Field mustard	cytosol	25.83	25.07
TraesCS5A01G247000.1	Wheat	nucleus	26.73	25.07
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	22.82	24.52
CDY10467	Canola	cytosol	24.92	24.48
TraesCS2A01G164800.1	Wheat	nucleus	25.23	24.35
CDY40332	Canola	cytosol	24.62	24.12
Bra009612.1-P	Field mustard	cytosol	24.62	24.12
TraesCS6A01G314900.1	Wheat	nucleus	25.83	24.02
AT5G02110.1	Thale cress	cytosol	23.72	23.17
TraesCS5A01G161000.1	Wheat	cytosol	24.62	23.16
TraesCS5A01G068600.1	Wheat	nucleus	22.22	21.08
TraesCS4A01G234600.1	Wheat	cytosol	20.72	20.47
CDX80803	Canola	cytosol	26.73	19.73
TraesCS4A01G046900.1	Wheat	nucleus	20.42	19.37
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	3.9	10.83

Protein Annotations

EnsemblPlants:TraesCS4A01G177400.1	EnsemblPlantsGene:TraesCS4A01G177400	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF215	PFAM:PF00134	PIRSF:PIRSF001771	SEG:seg	SMART:SM00385
SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:	:

Description

No Description!

Coordinates

chr4A:-:449119177..449120891

Molecular Weight (calculated)

36721.8 Da

IEP (calculated)

5.815

GRAVY (calculated)

-0.001

Length

333 amino acids

Sequence
(BLAST)

001: MHMCSQAGTP MEDDDASGII LYCDEDPFAD DSTPIPPPAA PSGGDVDDVQ QVVDLAMAYK ARERCFAPVG SAAYIHRLLH DHHQHGGVSS ARAKAVHYII
101: YAFSRLGLAA ATAFNAANYL DRFLSINCHL SWEVWMVELV SVACLSVACK LDEVTIPSLH DLQMEEVTSH SFRASTIRDM ELTLLKALQW RLSCVTPYSY
201: LDLLPLPTTA AANRSRCIRL LLRSLSEPSF LRFDASVVAA AALRCVALLQ DHAHLIIPPL CRLGDESDEC FKMMKALETS LDHHQYHKYS TADQLQGSPI
301: SVIAFESTER DSTVNSRSAL SRRLFGTPTT LDP

Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)

001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I

Arabidopsis Description

CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.