Factsheet for TraesCS4D01G135100.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G281500.1
TraesCS2B01G298800.1
TraesCS2D01G280300.1
TraesCS3A01G361000.1
TraesCS3B01G393400.1
TraesCS3D01G354800.1
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G347600.1
TraesCS5A01G482300.1
TraesCS5A01G521700.1
TraesCS5B01G495400.1
TraesCS5D01G495900.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	TraesCS4A01G410900.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4B01G311000.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4D01G308900.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4A01G410900.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4B01G311000.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4D01G308900.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4B01G353600.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS4D01G347600.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS5A01G521700.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS6A01G078200.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS6B01G105100.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS3A01G361000.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS3B01G393400.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS3D01G354800.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5A01G482300.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5B01G495400.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5D01G495900.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS2A01G281500.1	AT5G14170.1	20706207
AT5G02110.1	TraesCS2B01G298800.1	AT5G14170.1	20706207
AT5G02110.1	TraesCS2D01G280300.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G177400.1	Wheat	cytosol	94.66	95.8
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	94.36	95.78
Os11t0706801-00	Rice	nucleus	50.74	53.44
GSMUA_Achr10P...	Banana	cytosol	34.42	45.85
OQU84124	Sorghum	nucleus	56.38	44.5
GSMUA_Achr6P34040_001	Banana	nucleus	35.91	44.0
Zm00001d048594_P001	Maize	cytosol	52.82	41.88
VIT_08s0007g00790.t01	Wine grape	nucleus	29.38	29.29
KRH65892	Soybean	cytosol	23.74	27.78
KRH75669	Soybean	cytosol	22.85	26.64
KRH54622	Soybean	cytosol	11.57	25.49
KRH54628	Soybean	cytosol	11.57	25.49
TraesCS5D01G253500.1	Wheat	nucleus	26.71	24.86
TraesCS2D01G171700.1	Wheat	nucleus	25.22	24.85
TraesCS5D01G253200.1	Wheat	nucleus	26.11	24.72
CDY55121	Canola	cytosol	24.93	24.49
Bra005708.1-P	Field mustard	cytosol	24.63	24.2
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	21.96	23.64
CDY10467	Canola	cytosol	23.74	23.6
CDY40332	Canola	cytosol	23.44	23.24
Bra009612.1-P	Field mustard	cytosol	23.44	23.24
TraesCS5D01G206200.1	Wheat	nucleus	24.93	22.89
AT5G02110.1	Thale cress	cytosol	22.85	22.58
TraesCS5D01G165900.1	Wheat	cytosol	23.44	22.32
TraesCS5D01G080600.1	Wheat	nucleus	21.96	21.02
TraesCS6D01G294200.1	Wheat	nucleus	15.43	20.63
TraesCS4D01G079400.1	Wheat	cytosol	19.88	19.88
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	20.18	19.77
CDX80803	Canola	cytosol	25.52	19.07

Protein Annotations

EnsemblPlants:TraesCS4D01G135100.1	EnsemblPlantsGene:TraesCS4D01G135100	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF215	PFAM:PF00134	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:

Description

No Description!

Coordinates

chr4D:+:121967633..121969361

Molecular Weight (calculated)

37125.2 Da

IEP (calculated)

5.790

GRAVY (calculated)

-0.005

Length

337 amino acids

Sequence
(BLAST)

001: MHMCSQAGTP MEDDDASGVS ASGIILYCDE DPFADDSTPI PPPAASSGDV DDVQQVVDLA MEYKARERCY APVGSSAYIH RLLHDHHQHG GVSSARTKAV
101: HYIVYAFSRL GLAAATAFNA VNYVDRFLSI NCHLSWEVWM VELVSVACLS VACKLDEVTI PSLHDLRMEE VTSHSFRAST IRDMELTLLK ALQWRLACVT
201: PYSYLDLLPL PTTAAANRSR CIRLLLRSLS EPSFLRFDAS VVAAAALRCV ALLQDHAHLI IPPLCRLGDE SDECFKMMKA LETSLDHHQY HKYSTADQLQ
301: GSPISVIAFE STDHDSTVNS RSALSRRLFG TPTALDP

Best Arabidopsis Sequence Match ( AT5G02110.1 )
(BLAST)

001: MDNLLCEESW PASPLTPEPL PNFRHRSHDN DVVKMYPEID AATMEEAIAM DLEKELCFNN HGDKFVEFFV SKKLTDYRFH AFQWLIQTRS RLNLSYETVF
101: SAANCFDRFV YMTCCDEWTN WMVELVAVTS LSIASKFNEV TTPLLEELEM EGLTHMFHVN TVAQMELIIL KALEWRVNAV TSYTFSQTLV SKIGMVGDHM
201: IMNRITNHLL DVICDLKMLQ YPPSVVATAA IWILMEDKVC RESIMNLFEQ NHKEKIVKCV DGMKNRDIDH QSSRRRYSEG RSILSLLQRG DVMNMNGDYN
301: VEDLSKIFQI FRYEKKKRDR GNHQDNIRPA KRMTIEMSNY I

Arabidopsis Description

CYCD7-1Putative cyclin-D7-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LZM0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.