Factsheet for TraesCS4B01G140400.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G281500.1
TraesCS2B01G298800.1
TraesCS2D01G280300.1
TraesCS3A01G361000.1
TraesCS3B01G393400.1
TraesCS3D01G354800.1
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G347600.1
TraesCS5A01G482300.1
TraesCS5A01G521700.1
TraesCS5B01G495400.1
TraesCS5D01G495900.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G02110.1	TraesCS4A01G410900.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4B01G311000.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4D01G308900.1	AT2G27960.1	20706207
AT5G02110.1	TraesCS4A01G410900.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4B01G311000.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4D01G308900.1	AT2G27970.1	20706207
AT5G02110.1	TraesCS4B01G353600.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS4D01G347600.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS5A01G521700.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS6A01G078200.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS6B01G105100.1	AT3G48750.1	20706207
AT5G02110.1	TraesCS3A01G361000.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS3B01G393400.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS3D01G354800.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5A01G482300.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5B01G495400.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS5D01G495900.1	AT5G02220.1	20706207
AT5G02110.1	TraesCS2A01G281500.1	AT5G14170.1	20706207
AT5G02110.1	TraesCS2B01G298800.1	AT5G14170.1	20706207
AT5G02110.1	TraesCS2D01G280300.1	AT5G14170.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G177400.1	Wheat	cytosol	95.48	95.2
TraesCS4D01G135100.1	Wheat	cytosol, nucleus, plastid	95.78	94.36
Os11t0706801-00	Rice	nucleus	50.6	52.5
GSMUA_Achr10P...	Banana	cytosol	34.94	45.85
OQU84124	Sorghum	nucleus	56.93	44.26
GSMUA_Achr6P34040_001	Banana	nucleus	36.45	44.0
Zm00001d048594_P001	Maize	cytosol	53.61	41.88
VIT_08s0007g00790.t01	Wine grape	nucleus	29.82	29.29
KRH65892	Soybean	cytosol	25.0	28.82
KRH54622	Soybean	cytosol	12.95	28.1
KRH54628	Soybean	cytosol	12.95	28.1
KRH75669	Soybean	cytosol	24.1	27.68
TraesCS5B01G199100.1	Wheat	nucleus	25.9	26.88
TraesCS5B01G243900.1	Wheat	nucleus	27.11	25.35
CDY55121	Canola	cytosol	25.6	24.78
TraesCS2B01G190700.1	Wheat	nucleus	25.6	24.71
Bra005708.1-P	Field mustard	cytosol	25.3	24.49
TraesCS5B01G244100.1	Wheat	nucleus	26.51	24.44
TraesCS6B01G345300.1	Wheat	plastid	25.9	24.36
CDY10467	Canola	cytosol	24.4	23.89
Bra009612.1-P	Field mustard	cytosol	24.1	23.53
CDY40332	Canola	cytosol	24.1	23.53
TraesCS5B01G158400.1	Wheat	cytosol	25.0	23.45
AT5G02110.1	Thale cress	cytosol	23.19	22.58
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	22.89	22.29
TraesCS5B01G075000.1	Wheat	nucleus	22.29	21.02
TraesCS4B01G080500.1	Wheat	nucleus	20.18	19.94
CDX80803	Canola	cytosol	26.2	19.29
TraesCS4B01G257900.1	Wheat	cytosol	18.98	19.09

Protein Annotations

EnsemblPlants:TraesCS4B01G140400.1	EnsemblPlantsGene:TraesCS4B01G140400	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_N
PANTHER:PTHR10177	PANTHER:PTHR10177:SF215	PFAM:PF00134	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:

Description

No Description!

Coordinates

chr4B:+:184861735..184863470

Molecular Weight (calculated)

36707.7 Da

IEP (calculated)

6.099

GRAVY (calculated)

-0.029

Length

332 amino acids

Sequence
(BLAST)

001: MHMCSQAGTP MEDDDASGII LYCDEDPFAD DSTPIPPPAA SSVDVDDVQQ VVDLAKEYKA RERCYAPVGS SAYIRRLLHD HHQHGGVSSA RTKAVHYIIY
101: AFSRLGLAAA SAFNAVNYLD RFLSINCHLS WEVWMVELVS VACLSVACKL DEVTIPSLHD LQMEEVTSHS FRASTIRDME LTLLKALQWR LSCVTPYSYL
201: DLLPLPTTTA AANRSRCIRL LLRSLSEPSF LRFDASVVAA AALRCVALLQ DHAHLIIPPL CRLGDESDEC FKMMKALETS VGHHHHKYST ADQLQGSPIS
301: VIAFESTDRD STVNSRSALS RRLFGTPTTL DP

Best Arabidopsis Sequence Match ( AT4G34160.1 )
(BLAST)

001: MAIRKEEESR EEQSNSFLLD ALYCEEEKWD DEGEEVEENS SLSSSSSPFV VLQQDLFWED EDLVTLFSKE EEQGLSCLDD VYLSTDRKEA VGWILRVNAH
101: YGFSTLAAVL AITYLDKFIC SYSLQRDKPW MLQLVSVACL SLAAKVEETQ VPLLLDFQVE ETKYVFEAKT IQRMELLILS TLEWKMHLIT PISFVDHIIR
201: RLGLKNNAHW DFLNKCHRLL LSVISDSRFV GYLPSVVAAA TMMRIIEQVD PFDPLSYQTN LLGVLNLTKE KVKTCYDLIL QLPVDRIGLQ IQIQSSKKRK
301: SHDSSSSLNS PSCVIDANPF NSDESSNDSW SASSCNPPTS SSSPQQQPPL KKMRGAEENE KKKPILHLPW AIVATP

Arabidopsis Description

CYCD3-1Cyclin-D3-1 [Source:UniProtKB/Swiss-Prot;Acc:P42753]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.