Factsheet for TraesCS5B01G075000.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G410900.1
TraesCS4B01G311000.1
TraesCS4B01G353600.1
TraesCS4D01G308900.1
TraesCS4D01G347600.1
TraesCS5A01G521700.1
TraesCS6A01G078200.1
TraesCS6B01G105100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	TraesCS4A01G410900.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4B01G311000.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4D01G308900.1	AT2G27960.1	20706207
AT4G37630.1	TraesCS4A01G410900.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4B01G311000.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4D01G308900.1	AT2G27970.1	20706207
AT4G37630.1	TraesCS4B01G353600.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS4D01G347600.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS5A01G521700.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS6A01G078200.1	AT3G48750.1	20706207
AT4G37630.1	TraesCS6B01G105100.1	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G068600.1	Wheat	nucleus	98.3	98.58
TraesCS5D01G080600.1	Wheat	nucleus	98.3	98.3
HORVU5Hr1G018180.1	Barley	nucleus	95.74	96.56
Os12t0588800-01	Rice	nucleus	76.14	73.42
Zm00001d041345_P001	Maize	cytosol	69.6	70.2
EES17294	Sorghum	nucleus	72.16	69.97
Zm00001d030894_P002	Maize	nucleus	68.47	69.86
TraesCS4B01G080500.1	Wheat	nucleus	56.53	59.23
GSMUA_Achr4P07110_001	Banana	nucleus	37.78	41.56
GSMUA_Achr10P...	Banana	nucleus	31.82	39.16
GSMUA_Achr6P16910_001	Banana	cytosol	29.26	37.05
VIT_18s0001g09160.t01	Wine grape	nucleus	31.82	35.33
TraesCS4B01G257900.1	Wheat	cytosol	32.67	34.85
GSMUA_Achr6P07740_001	Banana	nucleus	30.97	34.28
KRH52092	Soybean	nucleus	29.26	32.8
KRH61407	Soybean	nucleus	28.69	32.37
VIT_07s0129g00200.t01	Wine grape	nucleus	29.83	31.82
KRH28363	Soybean	nucleus	28.69	30.51
KRH77118	Soybean	nucleus	28.12	29.82
AT4G37630.1	Thale cress	nucleus	26.99	29.41
TraesCS5B01G158400.1	Wheat	cytosol	28.69	28.53
CDY29570	Canola	nucleus	26.7	28.14
CDX72643	Canola	nucleus	26.99	27.94
Bra017840.1-P	Field mustard	nucleus	26.99	27.86
TraesCS5B01G199100.1	Wheat	nucleus	24.43	26.88
TraesCS6B01G345300.1	Wheat	plastid	25.85	25.78
TraesCS5B01G243900.1	Wheat	nucleus	25.0	24.79
TraesCS5B01G244100.1	Wheat	nucleus	25.28	24.72
TraesCS2B01G190700.1	Wheat	nucleus	23.86	24.42
TraesCS4B01G140400.1	Wheat	cytosol, nucleus, plastid	21.02	22.29
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	17.9	18.48

Protein Annotations

EnsemblPlants:TraesCS5B01G075000.1	EnsemblPlantsGene:TraesCS5B01G075000	Gene3D:1.10.472.10	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N	PANTHER:PTHR10177
PANTHER:PTHR10177:SF225	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	ScanProsite:PS00292	SEG:seg
SMART:SM00385	SUPFAM:SSF47954	TIGR:cd00043	MapMan:13.1.1.1.4	:	:

Description

No Description!

Coordinates

chr5B:+:89304921..89306386

Molecular Weight (calculated)

37925.5 Da

IEP (calculated)

4.349

GRAVY (calculated)

-0.076

Length

352 amino acids

Sequence
(BLAST)

001: MPGMEEAEDY ESCAFSLTCP EDGAELGDGV VDDGDLFLFY VGGGAAADDE DGDDEYVEQL VSKEASFCSS SDSGDADCSS AASEDWFLQA RLAAVKWILE
101: TRGCFGFGHR TAYLAIAYFD RFFLRRRVDR AAMPWAARLL SVACVSVAAK MEEYCAPALS ELDAGGGYEF CSASVRRMEL LVLSTLGWRM AAVTPFDYLP
201: CFSSRLDRHD GRGGGGHDPA RVALKSIGFI FATAEAGSVL DYRPSTVAAA AILAASYGAL LTKEALESKM DNLSPPCPIE KEHVHACYSM MVGDLRNRKS
301: NGKRSLPCSD SNEVATSTYD SVLVDDVADT AAFMAAVSEM NKRIRLEPPG IH

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.