Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EES17294 | Sorghum | nucleus | 93.98 | 90.36 |
| Zm00001d030894_P002 | Maize | nucleus | 87.97 | 88.99 |
| Os12t0588800-01 | Rice | nucleus | 73.35 | 70.14 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 70.49 | 70.09 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 70.49 | 69.89 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 70.2 | 69.6 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 69.34 | 69.34 |
| Zm00001d013728_P001 | Maize | cytosol | 53.01 | 50.68 |
| Zm00001d033330_P001 | Maize | nucleus | 50.43 | 49.72 |
| GSMUA_Achr4P07110_001 | Banana | nucleus | 34.96 | 38.12 |
| GSMUA_Achr10P... | Banana | nucleus | 30.37 | 37.06 |
| GSMUA_Achr6P16910_001 | Banana | cytosol | 27.79 | 34.89 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 31.23 | 34.38 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 31.52 | 33.33 |
| KRH61407 | Soybean | nucleus | 29.8 | 33.33 |
| KRH52092 | Soybean | nucleus | 29.8 | 33.12 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 29.8 | 32.7 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 32.95 | 32.58 |
| KRH28363 | Soybean | nucleus | 28.65 | 30.21 |
| KRH77118 | Soybean | nucleus | 28.65 | 30.12 |
| AT4G37630.1 | Thale cress | nucleus | 26.07 | 28.17 |
| Zm00001d028092_P001 | Maize | cytosol | 21.49 | 27.57 |
| Zm00001d029407_P001 | Maize | nucleus | 26.65 | 26.88 |
| CDX72643 | Canola | nucleus | 26.07 | 26.76 |
| CDY29570 | Canola | nucleus | 25.5 | 26.65 |
| Bra017840.1-P | Field mustard | nucleus | 25.79 | 26.39 |
| Zm00001d005928_P002 | Maize | nucleus | 26.65 | 25.76 |
| Zm00001d019696_P001 | Maize | cytosol | 28.37 | 25.58 |
| Zm00001d050475_P001 | Maize | cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole | 22.35 | 25.24 |
| Zm00001d018128_P001 | Maize | nucleus | 24.93 | 24.51 |
| Zm00001d052185_P001 | Maize | nucleus | 25.21 | 24.44 |
| Zm00001d005293_P001 | Maize | cytosol | 26.93 | 24.04 |
| Zm00001d022175_P001 | Maize | nucleus | 25.5 | 23.61 |
| Zm00001d003439_P001 | Maize | plastid | 8.31 | 22.83 |
| Zm00001d021745_P001 | Maize | cytosol, nucleus, plastid | 18.91 | 21.5 |
| Zm00001d031837_P001 | Maize | nucleus | 25.79 | 21.23 |
| Zm00001d020353_P001 | Maize | nucleus | 19.77 | 20.85 |
| Zm00001d044984_P001 | Maize | mitochondrion | 15.76 | 19.93 |
| Zm00001d049334_P001 | Maize | mitochondrion | 15.47 | 18.49 |
| Zm00001d038580_P001 | Maize | plastid | 15.47 | 16.22 |
| Zm00001d048594_P001 | Maize | cytosol | 18.05 | 14.82 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:100501413 | MapMan:13.1.1.1.4 | EMBL:BT085259 | UniProt:C4J362 | InterPro:Cyclin-like |
| InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | ProteinID:ONM32839.1 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | PANTHER:PTHR10177 |
| PANTHER:PTHR10177:SF225 | SMART:SM00385 | SUPFAM:SSF47954 | UniParc:UPI0001A4BC8E | EnsemblPlantsGene:Zm00001d041345 | EnsemblPlants:Zm00001d041345_P001 |
| EnsemblPlants:Zm00001d041345_T001 | SEG:seg | : | : | : | : |
Description
Cyclin-D5-1
Coordinates
chr3:-:113725965..113728247
Molecular Weight (calculated)
37869.5 Da
IEP (calculated)
4.495
GRAVY (calculated)
-0.056
Length
349 amino acids
Sequence
(BLAST)
(BLAST)
001: MMPVAAVDDW SERGFSLTCE EDCADLGNGV VDDDEFLPLY NAGEEEEEEY LEQLVFKETS LCSSSDSAAD CDGDGEGDEE YPSLASEEWF RQARLAAVKW
101: ILETRGCFGF GHRTAYLAIA YFDSFLLRRR VDREAMPWAA QLLSVACVSV AAKMEECQVP ALSEFHAGGY DFDSASIRRM ELLVLSTLGW RMGAVTPLDF
201: LPCFSSRVHP HGGAGAGGHV AHKAIGFIFA TAEAGSVLDH RPSTVAAAAI LAATYGPLLT KEALDSKMSY LSPSCLIEKE HVHACYSMMV GDNNRRGSKR
301: SLPCSVSNEI ATSTYHSVLV DDVTDTAAAF ATAVSARNKR IRLELTGIS
101: ILETRGCFGF GHRTAYLAIA YFDSFLLRRR VDREAMPWAA QLLSVACVSV AAKMEECQVP ALSEFHAGGY DFDSASIRRM ELLVLSTLGW RMGAVTPLDF
201: LPCFSSRVHP HGGAGAGGHV AHKAIGFIFA TAEAGSVLDH RPSTVAAAAI LAATYGPLLT KEALDSKMSY LSPSCLIEKE HVHACYSMMV GDNNRRGSKR
301: SLPCSVSNEI ATSTYHSVLV DDVTDTAAAF ATAVSARNKR IRLELTGIS
001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL
Arabidopsis Description
CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.