Factsheet for Zm00001d028092_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
iPSORT:	secretory
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d015611_P002
Zm00001d027373_P003
Zm00001d027655_P001
Zm00001d048394_P001
Zm00001d048497_P002
Zm00001d053930_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37630.1	Zm00001d015611_P002	AT2G27960.1	20706207
AT4G37630.1	Zm00001d027655_P001	AT2G27960.1	20706207
AT4G37630.1	Zm00001d048394_P001	AT2G27960.1	20706207
AT4G37630.1	Zm00001d015611_P002	AT2G27970.1	20706207
AT4G37630.1	Zm00001d027655_P001	AT2G27970.1	20706207
AT4G37630.1	Zm00001d048394_P001	AT2G27970.1	20706207
AT4G37630.1	Zm00001d027373_P003	AT3G48750.1	20706207
AT4G37630.1	Zm00001d048497_P002	AT3G48750.1	20706207
AT4G37630.1	Zm00001d053930_P001	AT3G48750.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d003439_P001	Maize	plastid	37.13	79.53
Zm00001d048143_P003	Maize	nucleus, peroxisome, plastid	78.68	60.62
EER92677	Sorghum	nucleus	72.43	55.49
TraesCS7A01G479000.1	Wheat	cytosol, nucleus, plastid	22.06	50.0
TraesCS4D01G257800.1	Wheat	cytosol, nucleus, plastid	55.51	43.9
Os03t0203800-01	Rice	nucleus	55.15	43.48
TraesCS4A01G046900.1	Wheat	nucleus	54.04	41.88
TraesCS4B01G257900.1	Wheat	cytosol	50.37	41.52
GSMUA_Achr4P07110_001	Banana	nucleus	27.57	23.44
Zm00001d013728_P001	Maize	cytosol	30.88	23.01
Zm00001d033330_P001	Maize	nucleus	28.68	22.03
GSMUA_Achr6P16910_001	Banana	cytosol	22.06	21.58
Zm00001d041345_P001	Maize	cytosol	27.57	21.49
Zm00001d030894_P002	Maize	nucleus	26.84	21.16
GSMUA_Achr6P07740_001	Banana	nucleus	24.63	21.07
GSMUA_Achr10P...	Banana	nucleus	20.59	19.58
KRH77118	Soybean	nucleus	22.79	18.67
VIT_18s0001g09160.t01	Wine grape	nucleus	20.59	17.67
KRH28363	Soybean	nucleus	21.32	17.52
KRH52092	Soybean	nucleus	19.12	16.56
Zm00001d029407_P001	Maize	nucleus	20.96	16.47
CDY29570	Canola	nucleus	20.22	16.47
Bra017840.1-P	Field mustard	nucleus	20.59	16.42
CDX72643	Canola	nucleus	19.85	15.88
KRH61407	Soybean	nucleus	18.01	15.71
Zm00001d005928_P002	Maize	nucleus	20.22	15.24
AT4G37630.1	Thale cress	nucleus	18.01	15.17
Zm00001d018128_P001	Maize	nucleus	19.49	14.93
Zm00001d022175_P001	Maize	nucleus	20.59	14.85
VIT_07s0129g00200.t01	Wine grape	nucleus	18.01	14.85
Zm00001d052185_P001	Maize	nucleus	19.49	14.72
Zm00001d020353_P001	Maize	nucleus	17.28	14.2
Zm00001d005293_P001	Maize	cytosol	19.12	13.3
Zm00001d019696_P001	Maize	cytosol	18.75	13.18
Zm00001d050475_P001	Maize	cytosol, endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, plastid, vacuole	14.71	12.95
Zm00001d031837_P001	Maize	nucleus	19.49	12.5
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	13.97	12.38
Zm00001d048594_P001	Maize	cytosol	17.28	11.06
Zm00001d044984_P001	Maize	mitochondrion	8.82	8.7
Zm00001d049334_P001	Maize	mitochondrion	8.46	7.88
Zm00001d038580_P001	Maize	plastid	8.09	6.61

Protein Annotations

EnsemblPlants:Zm00001d028092_P001	EnsemblPlants:Zm00001d028092_T001	EnsemblPlantsGene:Zm00001d028092	Gene3D:1.10.472.10	InterPro:Cyclin-like	InterPro:Cyclin-like_sf
InterPro:Cyclin_N	PANTHER:PTHR10177	PANTHER:PTHR10177:SF273	PFAM:PF00134	ProteinID:ONL94680.1	SEG:seg
SUPFAM:SSF47954	UniParc:UPI000843AD97	UniProt:A0A1D6JRX6	MapMan:35.1	:	:

Description

Cyclin-D5-1

Coordinates

chr1:+:22729803..22732019

Molecular Weight (calculated)

28618.5 Da

IEP (calculated)

5.592

GRAVY (calculated)

-0.160

Length

272 amino acids

Sequence
(BLAST)

001: MGDAAAAAAT ASTSAPATPT SILICLEDGS DLLSDAYDGA GATDFVVARD EHLLVEDQDE EYVALLLSKE SAAVCAPAEE ETEEWMKTAR SGCVRWIIKT
101: TAMFGFGGKT AYVAVTYLDR FLVQRRVNVT ALLVTLHFPS PSPLPASPLS FLISSVEYRP STIAVASILV ARGREETPAG SLDALKAILG SSCPQLDTGH
201: VYSCYRAMIR EDDKSPTHST STGVASSGVS VAGNGSPSPG ANNAAGSGPP ATPDSHKHNH NQRRRLRSPQ RQ

Best Arabidopsis Sequence Match ( AT4G37630.1 )
(BLAST)

001: MGEPKDSLAL FLCHESESSL NEDDDETIER SDKQEPHFTT TIDDEDYVAD LVLKENLRFE TLPSKTTSSS DRLIAIDWIL TTRTRFGFQH QTAYIAISYF
101: DLFLHKRFIG LQKDETWAMR LLSVACLSLA AKMEERIVPG LSQYPQDHDF VFKPDVIRKT ELLILSTLDW KMNLITPFHY FNYFLAKISQ DNHSVSKDLV
201: LLRSSDSLLA LTKEISFTEY RQFVVAAVTT LLASSSTSSD IRLTREEIAN KFGSISWWTS NENENVYLCY QRTLEIEERK HMTPPPEIAV SREPPASGSG
301: AKRRLSFDDS DQSSPPAKRM RRL

Arabidopsis Description

CYCD5-1Cyclin-D5-1 [Source:UniProtKB/Swiss-Prot;Acc:Q2V3B2]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.