Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... | |
| GSMUA_Achr2P11710_001 | |
| GSMUA_Achr2P11750_001 |
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr6P16910_001 | Banana | cytosol | 34.06 | 39.21 |
| GSMUA_Achr6P07740_001 | Banana | nucleus | 38.12 | 38.36 |
| TraesCS5D01G080600.1 | Wheat | nucleus | 41.88 | 38.07 |
| TraesCS5A01G068600.1 | Wheat | nucleus | 41.56 | 37.89 |
| TraesCS5B01G075000.1 | Wheat | nucleus | 41.56 | 37.78 |
| HORVU5Hr1G018180.1 | Barley | nucleus | 40.0 | 36.68 |
| Zm00001d030894_P002 | Maize | nucleus | 38.75 | 35.94 |
| Zm00001d013728_P001 | Maize | cytosol | 40.62 | 35.62 |
| TraesCS4A01G234600.1 | Wheat | cytosol | 37.5 | 35.61 |
| EES17294 | Sorghum | nucleus | 40.0 | 35.26 |
| TraesCS4B01G080500.1 | Wheat | nucleus | 36.88 | 35.12 |
| TraesCS4D01G079400.1 | Wheat | cytosol | 36.88 | 35.01 |
| GSMUA_Achr10P... | Banana | nucleus | 31.25 | 34.97 |
| Zm00001d041345_P001 | Maize | cytosol | 38.12 | 34.96 |
| EER92677 | Sorghum | nucleus | 38.75 | 34.93 |
| Os12t0588800-01 | Rice | nucleus | 39.69 | 34.79 |
| Os03t0617500-01 | Rice | cytosol, nucleus | 40.62 | 34.57 |
| EER91226 | Sorghum | nucleus | 39.38 | 34.05 |
| VIT_18s0001g09160.t01 | Wine grape | nucleus | 33.44 | 33.75 |
| Zm00001d048143_P003 | Maize | nucleus, peroxisome, plastid | 37.19 | 33.71 |
| Zm00001d033330_P001 | Maize | nucleus | 37.19 | 33.62 |
| TraesCS4D01G257800.1 | Wheat | cytosol, nucleus, plastid | 35.94 | 33.43 |
| TraesCS4A01G046900.1 | Wheat | nucleus | 35.94 | 32.76 |
| KRH52092 | Soybean | nucleus | 31.88 | 32.48 |
| Os03t0203800-01 | Rice | nucleus | 35.0 | 32.46 |
| TraesCS4B01G257900.1 | Wheat | cytosol | 33.44 | 32.42 |
| KRH61407 | Soybean | nucleus | 31.56 | 32.37 |
| KRH28363 | Soybean | nucleus | 32.5 | 31.42 |
| KRH77118 | Soybean | nucleus | 30.94 | 29.82 |
| VIT_07s0129g00200.t01 | Wine grape | nucleus | 30.62 | 29.7 |
| HORVU4Hr1G013700.2 | Barley | plastid | 36.56 | 29.62 |
| GSMUA_Achr6P02210_001 | Banana | plastid | 22.19 | 28.51 |
| Zm00001d028092_P001 | Maize | cytosol | 23.44 | 27.57 |
| GSMUA_Achr4P23840_001 | Banana | cytosol, nucleus, plasma membrane | 20.94 | 26.69 |
| GSMUA_Achr10P... | Banana | nucleus | 26.56 | 26.48 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 24.69 | 26.07 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 24.06 | 26.01 |
| AT4G37630.1 | Thale cress | nucleus | 26.25 | 26.01 |
| GSMUA_Achr9P15070_001 | Banana | nucleus | 28.12 | 25.71 |
| GSMUA_Achr9P30040_001 | Banana | cytosol, nucleus, peroxisome | 19.38 | 25.62 |
| GSMUA_Achr3P06730_001 | Banana | nucleus | 27.5 | 25.36 |
| Zm00001d003439_P001 | Maize | plastid | 10.0 | 25.2 |
| GSMUA_Achr10P... | Banana | nucleus | 26.56 | 24.71 |
| CDY29570 | Canola | nucleus | 25.62 | 24.55 |
| GSMUA_Achr3P21210_001 | Banana | nucleus | 26.88 | 24.36 |
| GSMUA_Achr5P22980_001 | Banana | nucleus | 26.56 | 24.36 |
| CDX72643 | Canola | nucleus | 25.62 | 24.12 |
| Bra017840.1-P | Field mustard | nucleus | 25.62 | 24.05 |
| GSMUA_Achr6P10260_001 | Banana | cytosol | 27.19 | 23.97 |
| GSMUA_Achr6P34040_001 | Banana | nucleus | 20.31 | 23.64 |
| GSMUA_Achr7P19040_001 | Banana | cytosol, endoplasmic reticulum, nucleus | 26.25 | 23.46 |
| GSMUA_Achr5P17920_001 | Banana | nucleus | 25.31 | 23.41 |
| GSMUA_Achr8P23430_001 | Banana | nucleus | 25.31 | 23.34 |
| GSMUA_Achr10P... | Banana | cytosol | 18.44 | 23.32 |
| GSMUA_Achr2P22330_001 | Banana | nucleus | 25.62 | 23.03 |
| GSMUA_Achr6P24270_001 | Banana | nucleus | 21.88 | 23.03 |
| GSMUA_Achr7P12850_001 | Banana | nucleus | 25.94 | 22.99 |
| GSMUA_Achr10P... | Banana | nucleus | 25.31 | 22.82 |
| GSMUA_Achr9P24600_001 | Banana | cytosol, nucleus, plasma membrane | 21.25 | 22.67 |
| TraesCS7A01G479000.1 | Wheat | cytosol, nucleus, plastid | 8.44 | 22.5 |
| GSMUA_Achr7P26100_001 | Banana | nucleus | 24.69 | 21.53 |
| GSMUA_Achr1P22570_001 | Banana | nucleus | 24.69 | 20.73 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 21.56 | 20.0 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 22.5 | 19.89 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 23.44 | 19.33 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 23.44 | 19.28 |
| GSMUA_AchrUn_... | Banana | cytosol | 18.44 | 18.61 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 22.81 | 17.94 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 22.5 | 17.69 |
| GSMUA_Achr9P12120_001 | Banana | nucleus | 22.19 | 16.82 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSMUA_Achr4G07110_001 | EnsemblPlants:GSMUA_Achr4P07110_001 |
| EnsemblPlants:GSMUA_Achr4T07110_001 | UniProt:M0SLS8 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 | ScanProsite:PS00292 |
| PANTHER:PTHR10177 | PANTHER:PTHR10177:SF255 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 | UniParc:UPI0002954665 |
| SEG:seg | : | : | : | : | : |
Description
Putative Cyclin-D5-3 [Source:GMGC_GENE;Acc:GSMUA_Achr4G07110_001]
Coordinates
chr4:+:5284055..5285362
Molecular Weight (calculated)
35261.7 Da
IEP (calculated)
4.767
GRAVY (calculated)
-0.122
Length
320 amino acids
Sequence
(BLAST)
(BLAST)
001: MAESSDCAPP SALIWEEDGP GLDDEDDDGV LKNDMAALCN EILALEADGE YVEWLLSREK DRESRTRDSS PESSCDPARS GAIRWIVEAQ RCFRFGLRTA
101: YTAVAYFDRF FAHKTIDAMK GKTWALELLS VACLSLAAKM EEHSAPAVSE FRVKGYRFSS EAAQRMELFV LSTLEWRMLT VTPFAYLNVF ASKFDERGQK
201: GLISKAIDFI FAAMEVMNLV DFQPSTIAAA AVLAAWDARL TKRLVESKTS LLSCCGSLDA EYVFSCYSLI VLESHKEKAR AATFLASSGT SPANCESTTD
301: TGTGSTVSLA TTSSKRRRLQ
101: YTAVAYFDRF FAHKTIDAMK GKTWALELLS VACLSLAAKM EEHSAPAVSE FRVKGYRFSS EAAQRMELFV LSTLEWRMLT VTPFAYLNVF ASKFDERGQK
201: GLISKAIDFI FAAMEVMNLV DFQPSTIAAA AVLAAWDARL TKRLVESKTS LLSCCGSLDA EYVFSCYSLI VLESHKEKAR AATFLASSGT SPANCESTTD
301: TGTGSTVSLA TTSSKRRRLQ
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.