Factsheet for GSMUA_Achr4P23840_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, nucleus, cytosol

Predictor Summary:

nucleus 4
mitochondrion 1
plasma membrane 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P11790_001
GSMUA_Achr4P02420_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P08220_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P12510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	GSMUA_Achr2P11710_001	AT2G27960.1	20706207
AT4G03270.1	GSMUA_Achr2P11750_001	AT2G27960.1	20706207
AT4G03270.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr1P00900_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr1P20410_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr2P11790_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr4P26490_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr5P12920_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr5P20430_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr5P21770_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr6P36640_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr8P12510_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr6P08220_001	AT3G12280.1	22921914
AT4G03270.1	GSMUA_Achr8P00470_001	AT3G12280.1	22921914
AT4G03270.1	GSMUA_Achr11P...	AT3G48750.1	20706207
AT4G03270.1	GSMUA_Achr11P...	AT3G54180.1	22921914
AT4G03270.1	GSMUA_Achr4P02420_001	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P24270_001	Banana	nucleus	62.95	51.97
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	59.36	49.67
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	41.04	42.56
VIT_12s0134g00500.t01	Wine grape	nucleus	49.8	42.52
KRH10729	Soybean	nucleus	42.63	39.34
KRH21593	Soybean	nucleus	42.23	38.97
KRH22479	Soybean	cytosol	46.22	36.71
Solyc02g079370.2.1	Tomato	nucleus	43.43	36.7
GSMUA_Achr9P12120_001	Banana	nucleus	61.35	36.49
VIT_00s0203g00160.t01	Wine grape	cytosol	45.82	36.39
KRH26876	Soybean	nucleus	45.42	36.19
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	43.03	36.0
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	35.46	35.46
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	43.03	34.84
Solyc03g006670.2.1	Tomato	nucleus	43.03	34.73
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	43.03	34.5
PGSC0003DMT400012934	Potato	nucleus	41.43	34.32
KRH25470	Soybean	nucleus	44.22	34.26
CDY22116	Canola	nucleus	40.64	34.23
Bra034198.1-P	Field mustard	nucleus	40.64	34.23
EER99528	Sorghum	cytosol	42.63	34.08
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	41.43	33.88
CDX90892	Canola	nucleus	20.32	33.55
CDY21951	Canola	nucleus	40.24	33.44
PGSC0003DMT400039033	Potato	nucleus	41.43	33.44
KRH56054	Soybean	cytosol, nucleus, plasma membrane	43.82	33.43
AT4G03270.1	Thale cress	nucleus	39.84	33.11
Solyc07g054950.1.1	Tomato	nucleus	40.24	32.58
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	43.43	31.96
Os07t0556000-01	Rice	cytosol	39.84	31.25
HORVU7Hr1G117300.3	Barley	cytosol	18.73	28.48
GSMUA_Achr3P06030_001	Banana	cytosol	30.68	26.01
GSMUA_Achr6P02210_001	Banana	plastid	25.5	25.7
GSMUA_Achr3P06730_001	Banana	nucleus	35.46	25.65
GSMUA_Achr8P23430_001	Banana	nucleus	35.46	25.65
GSMUA_Achr6P16910_001	Banana	cytosol	28.29	25.54
GSMUA_Achr10P...	Banana	cytosol	24.7	24.51
GSMUA_Achr9P28180_001	Banana	nucleus	29.48	24.42
GSMUA_Achr10P...	Banana	nucleus	33.47	24.42
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	34.66	24.3
GSMUA_Achr2P22330_001	Banana	nucleus	34.26	24.16
GSMUA_Achr5P17920_001	Banana	nucleus	33.07	23.99
GSMUA_Achr9P15070_001	Banana	nucleus	33.07	23.71
GSMUA_Achr10P...	Banana	nucleus	30.28	23.68
GSMUA_Achr6P34040_001	Banana	nucleus	25.9	23.64
GSMUA_Achr7P12850_001	Banana	nucleus	33.07	22.99
GSMUA_Achr10P...	Banana	nucleus	32.27	22.82
GSMUA_Achr3P21210_001	Banana	nucleus	31.87	22.66
GSMUA_Achr5P22980_001	Banana	nucleus	31.47	22.64
GSMUA_Achr10P...	Banana	nucleus	25.5	22.38
GSMUA_Achr6P10260_001	Banana	cytosol	31.47	21.76
GSMUA_Achr7P26100_001	Banana	nucleus	31.47	21.53
GSMUA_Achr1P22570_001	Banana	nucleus	31.87	21.0
GSMUA_Achr4P07110_001	Banana	nucleus	26.69	20.94
GSMUA_Achr6P07740_001	Banana	nucleus	26.29	20.75
GSMUA_Achr7P19980_001	Banana	nucleus	30.68	19.79
GSMUA_Achr2P05260_001	Banana	nucleus	25.9	18.84
GSMUA_Achr3P13140_001	Banana	nucleus	29.88	18.43
GSMUA_Achr4P20220_001	Banana	nucleus	26.29	18.23
GSMUA_Achr3P01010_001	Banana	nucleus	29.48	18.18
GSMUA_Achr1P09780_001	Banana	cytosol	27.09	17.53
GSMUA_AchrUn_...	Banana	cytosol	20.72	16.4

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSMUA_Achr4G23840_001	EnsemblPlants:GSMUA_Achr4P23840_001	EnsemblPlants:GSMUA_Achr4T23840_001
UniProt:M0SRJ5	PFAM:PF00134	PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF240
SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI0002948F2F	SEG:seg	:	:

Description

Putative cyclin-D6-1 [Source:GMGC_GENE;Acc:GSMUA_Achr4G23840_001]

Coordinates

chr4:+:23829285..23830357

Molecular Weight (calculated)

28442.5 Da

IEP (calculated)

9.651

GRAVY (calculated)

0.090

Length

251 amino acids

Sequence
(BLAST)

001: MELDLENPLA SADDDEQQRR RASVSALFAA ELDHSIASTI DIAVRRDAVS LIVQAQFTCN DADPFLTYLA VNYVDRFLSK RQIPREKPRI VRLLSVSCLS
101: LASKMTETHF PLAHFQGEEG SPFDSRTIFR MEMLILGALD WRMRSITPFS FLRFFVTFFS PTHPSLLRAL RSRASLTILR AQDEIKMMEF KPSVIAAAAL
201: LSAANVLFPS QFPAFRSAIS SCEFINRVRS KSKGIKISPR LFPFYSFPFV C

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.