Factsheet for VIT_00s0203g00160.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH21593	Soybean	nucleus	43.35	50.37
VIT_12s0134g00500.t01	Wine grape	nucleus	46.52	50.0
KRH10729	Soybean	nucleus	43.04	50.0
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	44.62	47.0
Solyc02g079370.2.1	Tomato	nucleus	43.99	46.8
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	36.39	45.82
GSMUA_Achr6P24270_001	Banana	nucleus	43.04	44.74
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	42.09	44.33
PGSC0003DMT400012934	Potato	nucleus	41.46	43.23
Solyc03g006670.2.1	Tomato	nucleus	40.19	40.84
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	30.7	38.65
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	29.43	38.43
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	33.86	34.52
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	33.86	34.19
GSMUA_Achr9P12120_001	Banana	nucleus	45.57	34.12
EER99528	Sorghum	cytosol	33.54	33.76
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	32.59	33.55
Os07t0556000-01	Rice	cytosol	33.86	33.44
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	34.18	31.67
VIT_01s0026g00710.t01	Wine grape	nucleus	28.16	27.47
VIT_18s0001g09160.t01	Wine grape	nucleus	25.63	25.55
VIT_18s0001g07220.t01	Wine grape	nucleus	27.53	24.51
HORVU7Hr1G117300.3	Barley	cytosol	12.66	24.24
VIT_00s0322g00010.t01	Wine grape	nucleus	22.78	23.61
VIT_07s0129g00200.t01	Wine grape	nucleus	24.05	23.03
VIT_03s0091g01060.t01	Wine grape	nucleus	25.0	22.32
VIT_00s0194g00280.t01	Wine grape	mitochondrion	19.94	22.11
VIT_00s0199g00210.t01	Wine grape	nucleus	24.68	22.1
VIT_07s0129g01100.t01	Wine grape	nucleus	20.89	21.36
VIT_08s0007g00790.t01	Wine grape	nucleus	22.47	21.01
VIT_18s0001g09920.t01	Wine grape	nucleus	21.52	18.28
VIT_03s0180g00040.t01	Wine grape	nucleus	20.57	16.84

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:100251622	wikigene:100251622	MapMan:13.1.1.1.4	ProteinID:CCB62762	ProteinID:CCB62762.1
InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant	InterPro:Cyclin_N	UniProt:F6I744
EMBL:FN596764	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0051726	EntrezGene:LOC100251622	wikigene:LOC100251622	PFAM:PF00134
PFAM:PF02984	PIRSF:PIRSF001771	PANTHER:PTHR10177	PANTHER:PTHR10177:SF240	SMART:SM00385	SMART:SM01332
SUPFAM:SSF47954	UniParc:UPI0002108ED5	ArrayExpress:VIT_00s0203g00160	EnsemblPlantsGene:VIT_00s0203g00160	EnsemblPlants:VIT_00s0203g00160.t01	RefSeq:XP_002267937
RefSeq:XP_002267937.2	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chrUn:+:12005084..12010149

Molecular Weight (calculated)

36381.7 Da

IEP (calculated)

8.549

GRAVY (calculated)

-0.246

Length

316 amino acids

Sequence
(BLAST)

001: MGTAKALFDS ESDHMVSQIF LRRFHAEPLR REAIALILQA QYSCNLDNFI SYLAVNYVDR FISKKEVPEE KPWILRLLVI SCLSLAAKMK KIDFSYSDFQ
101: KDEGFIFDAQ RIHRMELLIL STLNWRMRSI TPFSFVYFFI SLFELKDPAL TKALKDRATE LIFKARDEIK LLEYKPSIIA ASALLCASYE LFPLQFSSFK
201: AAISSCEYIN QESLNNCYHV MEEMVTNEWD ESIFDAAVSS TKTPICVLDR HYKNSVSEKS NTANTLEAAI KQPRGHENKA QRSQIQHLAS HSQSLGKGRR
301: TKYDLSAAPK RITRNE

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.