Factsheet for GSMUA_Achr9P12120_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr11P...
GSMUA_Achr1P00900_001
GSMUA_Achr1P20410_001
GSMUA_Achr2P11710_001
GSMUA_Achr2P11750_001
GSMUA_Achr2P11790_001
GSMUA_Achr4P02420_001
GSMUA_Achr4P26490_001
GSMUA_Achr5P12920_001
GSMUA_Achr5P20430_001
GSMUA_Achr5P21770_001
GSMUA_Achr6P08220_001
GSMUA_Achr6P36640_001
GSMUA_Achr8P00470_001
GSMUA_Achr8P12510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G03270.1	GSMUA_Achr2P11710_001	AT2G27960.1	20706207
AT4G03270.1	GSMUA_Achr2P11750_001	AT2G27960.1	20706207
AT4G03270.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr11P...	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr1P00900_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr1P20410_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr2P11790_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr4P26490_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr5P12920_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr5P20430_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr5P21770_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr6P36640_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr8P12510_001	AT2G32710.1	20706207
AT4G03270.1	GSMUA_Achr6P08220_001	AT3G12280.1	22921914
AT4G03270.1	GSMUA_Achr8P00470_001	AT3G12280.1	22921914
AT4G03270.1	GSMUA_Achr11P...	AT3G48750.1	20706207
AT4G03270.1	GSMUA_Achr11P...	AT3G54180.1	22921914
AT4G03270.1	GSMUA_Achr4P02420_001	AT3G54180.1	22921914

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P24270_001	Banana	nucleus	53.55	74.34
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	48.34	68.0
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	36.49	61.35
VIT_12s0134g00500.t01	Wine grape	nucleus	36.49	52.38
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	29.15	49.0
KRH21593	Soybean	nucleus	30.81	47.79
KRH10729	Soybean	nucleus	30.57	47.43
EER99528	Sorghum	cytosol	34.83	46.82
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	33.65	46.25
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	33.89	46.13
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	33.89	45.69
VIT_00s0203g00160.t01	Wine grape	cytosol	34.12	45.57
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	25.59	44.63
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	30.57	43.0
KRH26876	Soybean	nucleus	31.99	42.86
Os07t0556000-01	Rice	cytosol	32.46	42.81
Solyc02g079370.2.1	Tomato	nucleus	30.09	42.76
PGSC0003DMT400039033	Potato	nucleus	31.28	42.44
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	34.12	42.23
KRH22479	Soybean	cytosol	31.52	42.09
Solyc07g054950.1.1	Tomato	nucleus	30.81	41.94
Bra034198.1-P	Field mustard	nucleus	28.91	40.94
CDY22116	Canola	nucleus	28.91	40.94
Solyc03g006670.2.1	Tomato	nucleus	29.15	39.55
PGSC0003DMT400012934	Potato	nucleus	28.2	39.27
AT4G03270.1	Thale cress	nucleus	27.73	38.74
CDY21951	Canola	nucleus	27.73	38.74
KRH25470	Soybean	nucleus	29.62	38.58
KRH56054	Soybean	cytosol, nucleus, plasma membrane	29.62	37.99
CDX90892	Canola	nucleus	12.56	34.87
GSMUA_Achr6P02210_001	Banana	plastid	18.48	31.33
HORVU7Hr1G117300.3	Barley	cytosol	11.85	30.3
GSMUA_Achr3P06730_001	Banana	nucleus	24.41	29.68
GSMUA_Achr9P15070_001	Banana	nucleus	24.41	29.43
GSMUA_Achr10P...	Banana	nucleus	22.27	29.28
GSMUA_Achr10P...	Banana	nucleus	23.7	29.07
GSMUA_Achr5P17920_001	Banana	nucleus	23.7	28.9
GSMUA_Achr3P06030_001	Banana	cytosol	20.14	28.72
GSMUA_Achr8P23430_001	Banana	nucleus	23.46	28.53
GSMUA_Achr2P22330_001	Banana	nucleus	23.46	27.81
GSMUA_Achr9P28180_001	Banana	nucleus	19.91	27.72
GSMUA_Achr3P21210_001	Banana	nucleus	22.99	27.48
GSMUA_Achr7P19040_001	Banana	cytosol, endoplasmic reticulum, nucleus	23.22	27.37
GSMUA_Achr7P12850_001	Banana	nucleus	23.22	27.15
GSMUA_Achr5P22980_001	Banana	nucleus	22.27	26.93
GSMUA_Achr10P...	Banana	nucleus	22.27	26.48
GSMUA_Achr6P16910_001	Banana	cytosol	17.3	26.26
GSMUA_Achr6P10260_001	Banana	cytosol	22.27	25.9
GSMUA_Achr10P...	Banana	cytosol	15.4	25.69
GSMUA_Achr6P34040_001	Banana	nucleus	15.88	24.36
GSMUA_Achr10P...	Banana	nucleus	16.11	23.78
GSMUA_Achr6P07740_001	Banana	nucleus	17.77	23.58
GSMUA_Achr1P22570_001	Banana	nucleus	21.09	23.36
GSMUA_Achr7P26100_001	Banana	nucleus	20.14	23.16
GSMUA_Achr4P07110_001	Banana	nucleus	16.82	22.19
GSMUA_Achr7P19980_001	Banana	nucleus	20.38	22.11
GSMUA_Achr4P20220_001	Banana	nucleus	18.96	22.1
GSMUA_Achr1P09780_001	Banana	cytosol	20.14	21.91
GSMUA_Achr2P05260_001	Banana	nucleus	17.54	21.45
GSMUA_AchrUn_...	Banana	cytosol	15.64	20.82
GSMUA_Achr3P13140_001	Banana	nucleus	19.91	20.64
GSMUA_Achr3P01010_001	Banana	nucleus	19.67	20.39

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_D_plant
InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0007049
GO:GO:0008150	GO:GO:0009987	GO:GO:0051726	EnsemblPlantsGene:GSMUA_Achr9G12120_001	EnsemblPlants:GSMUA_Achr9P12120_001	EnsemblPlants:GSMUA_Achr9T12120_001
UniProt:M0TZM1	PFAM:PF00134	PFAM:PF02984	PANTHER:PTHR10177	PANTHER:PTHR10177:SF240	SMART:SM00385
SUPFAM:SSF47954	UniParc:UPI000295B605	SEG:seg	:	:	:

Description

Putative Cyclin-D6-1 [Source:GMGC_GENE;Acc:GSMUA_Achr9G12120_001]

Coordinates

chr9:-:7907527..7909427

Molecular Weight (calculated)

47354.3 Da

IEP (calculated)

8.910

GRAVY (calculated)

-0.032

Length

422 amino acids

Sequence
(BLAST)

001: MEFDLENPLT SSEDEHQGWG SISALFAAES DHMISTVGLI DLSSRRDAVS LVLQAQFDCN LDPFVAYLAI NYIDRFLSKR KIQREKPWII QLLSIACLSL
101: ASKMKKTNFM LANFQGKEGF IFDAQTIRRM ELLVLGTLDW RMRSVTPFSF LSFFISFFSP ARPPLLQALK AHATQILLKA KNEIKMLEFK PSVVAASSLL
201: SAAYEIFPIQ FPAFRAAVSS CNFVNEEKLW ECSIVIGAAT ATAMDGCDDS AGMGEGSSPE TPVTVLGRHS SSSESETARE GLKPKKDTLS CAASSMNRSH
301: RVVGGWMGSE NKNNIIVVNS LFSLSYIYIY YKIWNWNKSS FSFLWQKEKK RQKWLKVNEV ARHDACPSRR KQTVAGFRRE VGRVSVRPTL VVGVKPVYLE
401: EEGYVHASML FPCMIHACMG LL

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.