Factsheet for PGSC0003DMT400012934

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006670.2.1	Tomato	nucleus	90.43	88.1
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	60.07	60.67
KRH21593	Soybean	nucleus	38.94	43.38
KRH10729	Soybean	nucleus	38.28	42.65
VIT_00s0203g00160.t01	Wine grape	cytosol	43.23	41.46
GSMUA_Achr4P23840_001	Banana	cytosol, nucleus, plasma membrane	34.32	41.43
GSMUA_Achr6P24270_001	Banana	nucleus	39.27	39.14
GSMUA_Achr9P30040_001	Banana	cytosol, nucleus, peroxisome	31.02	38.84
GSMUA_Achr9P24600_001	Banana	cytosol, nucleus, plasma membrane	37.29	37.67
PGSC0003DMT400039033	Potato	nucleus	36.63	35.69
HORVU0Hr1G003280.5	Barley	cytosol, mitochondrion, nucleus	27.06	32.67
EER99528	Sorghum	cytosol	33.0	31.85
TraesCS2A01G208300.1	Wheat	nucleus, peroxisome, plasma membrane	32.34	31.61
TraesCS2D01G215000.3	Wheat	cytosol, nucleus, plasma membrane	32.34	31.31
Zm00001d021745_P001	Maize	cytosol, nucleus, plastid	31.02	30.62
Os07t0556000-01	Rice	cytosol	30.36	28.75
TraesCS2B01G234800.1	Wheat	cytosol, nucleus, plasma membrane	32.34	28.74
GSMUA_Achr9P12120_001	Banana	nucleus	39.27	28.2
HORVU7Hr1G117300.3	Barley	cytosol	14.19	26.06
PGSC0003DMT400040287	Potato	nucleus	27.06	24.4
PGSC0003DMT400033588	Potato	nucleus	27.06	23.03
PGSC0003DMT400088718	Potato	nucleus	21.45	20.97
PGSC0003DMT400037827	Potato	nucleus	23.76	20.93
PGSC0003DMT400066557	Potato	nucleus	24.42	20.67
PGSC0003DMT400068629	Potato	cytosol	15.51	19.58
PGSC0003DMT400039904	Potato	nucleus	20.79	19.57
PGSC0003DMT400020648	Potato	nucleus	20.79	18.98
PGSC0003DMT400031329	Potato	nucleus	19.47	18.32
PGSC0003DMT400011487	Potato	nucleus	10.89	17.93
PGSC0003DMT400068627	Potato	nucleus	17.82	17.53
PGSC0003DMT400064307	Potato	nucleus	20.13	16.8
PGSC0003DMT400041637	Potato	nucleus	21.12	16.24

Protein Annotations

Gene3D:1.10.472.10	EntrezGene:102582703	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom
InterPro:Cyclin_D_plant	InterPro:Cyclin_N	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0007049	GO:GO:0008150	GO:GO:0009987	GO:GO:0051726	UniProt:M1A218	PFAM:PF00134
PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400005041	PGSC:PGSC0003DMG400005041	EnsemblPlants:PGSC0003DMT400012934	PIRSF:PIRSF001771	PANTHER:PTHR10177
PANTHER:PTHR10177:SF240	SMART:SM00385	SUPFAM:SSF47954	UniParc:UPI000294EAE0	RefSeq:XP_006343269.1	SEG:seg

Description

D6-type cyclin [Source:PGSC_GENE;Acc:PGSC0003DMG400005041]

Coordinates

chr3:+:2229354..2231322

Molecular Weight (calculated)

34753.0 Da

IEP (calculated)

6.037

GRAVY (calculated)

-0.255

Length

303 amino acids

Sequence
(BLAST)

001: MKFDLENPLT AFDGHDDNDA VSALFAAESD HTPSFKSTDV HSSIRNHCFT LISQAQFSYD IDRFTAYLAV NYIDRFLSKQ VVLENKPWIV RILVTASLSL
101: AAKMRNINNL SISNNSSMDQ SEQRNDEGLI FNLQSVHRME NLILTTLNWR LRSITPFALL QFFNSLFELS NDQSLSQSLE DRASDIIFSS HYEIKLLEYK
201: PSILAASAFL CAAHELIPQQ VPFFLVAINS KCGHIYKEEV LNCWSVMREI TVDEVVSFSS LTPNSVLDQK RTSENADRNN GKKRRLNDFR NNQTFYISQV
301: QHY

Best Arabidopsis Sequence Match ( AT4G03270.1 )
(BLAST)

001: MEFHLEHPLS HSSLHNNFND DTDYETLPHS LFLVEFQHMP SSHYFHSLKS SAFLLSNRNQ AISSITQYSR KFDDPSLTYL AVNYLDRFLS SEDMPQSKPW
101: ILKLISLSCV SLSAKMRKPD MSVSDLPVEG EFFDAQMIER MENVILGALK WRMRSVTPFS FLAFFISLFE LKEEDPLLLK HSLKSQTSDL TFSLQHDISF
201: LEFKPSVIAG AALLFASFEL CPLQFPCFSN RINQCTYVNK DELMECYKAI QERDIIVGEN EGSTETAVNV LDQQFSSCES DKSITITASS SPKRRKTSTR
301: RY

Arabidopsis Description

CYCD6-1Putative cyclin-D6-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZR04]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.