Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 6
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400025910 | |
| PGSC0003DMT400071215 | |
| PGSC0003DMT400077428 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G70210.1 | PGSC0003DMT400025910 | AT1G76540.1 | 12857813 |
| AT1G70210.1 | PGSC0003DMT400077428 | AT3G48750.1 | 12857813 |
| AT1G70210.1 | PGSC0003DMT400071215 | AT3G54180.1 | 12857813 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g006050.2.1 | Tomato | nucleus | 95.54 | 95.25 |
| VIT_01s0026g00710.t01 | Wine grape | nucleus | 67.56 | 70.06 |
| KRH69476 | Soybean | nucleus | 67.86 | 67.26 |
| KRG99255 | Soybean | nucleus | 64.58 | 62.36 |
| KRH45743 | Soybean | nucleus | 64.58 | 60.28 |
| CDY11608 | Canola | nucleus | 56.25 | 59.62 |
| CDY38800 | Canola | nucleus | 56.55 | 59.56 |
| KRH74675 | Soybean | nucleus, plastid | 67.26 | 59.16 |
| AT1G70210.1 | Thale cress | nucleus | 58.93 | 58.41 |
| CDY67142 | Canola | nucleus | 57.14 | 56.64 |
| Bra007901.1-P | Field mustard | nucleus | 57.14 | 56.64 |
| CDY59943 | Canola | nucleus | 58.04 | 54.02 |
| GSMUA_Achr3P06030_001 | Banana | cytosol | 41.96 | 47.64 |
| GSMUA_Achr9P28180_001 | Banana | nucleus | 42.26 | 46.86 |
| Os09t0382300-00 | Rice | nucleus | 42.26 | 46.1 |
| TraesCS5B01G199100.1 | Wheat | nucleus | 43.15 | 45.31 |
| TraesCS5A01G200500.2 | Wheat | nucleus | 43.15 | 44.75 |
| OQU89443 | Sorghum | nucleus | 43.15 | 43.54 |
| HORVU5Hr1G059770.2 | Barley | nucleus | 42.86 | 40.34 |
| TraesCS5D01G206200.1 | Wheat | nucleus | 43.15 | 39.51 |
| Os06t0236600-00 | Rice | nucleus | 41.96 | 38.84 |
| GSMUA_Achr7P19980_001 | Banana | nucleus | 43.45 | 37.53 |
| Zm00001d020353_P001 | Maize | nucleus | 36.61 | 37.16 |
| PGSC0003DMT400033588 | Potato | nucleus | 35.12 | 33.15 |
| PGSC0003DMT400020648 | Potato | nucleus | 30.95 | 31.33 |
| PGSC0003DMT400068629 | Potato | cytosol | 22.32 | 31.25 |
| PGSC0003DMT400037827 | Potato | nucleus | 31.85 | 31.1 |
| PGSC0003DMT400039904 | Potato | nucleus | 29.76 | 31.06 |
| PGSC0003DMT400057686 | Potato | cytosol, nucleus, plasma membrane | 26.79 | 30.0 |
| PGSC0003DMT400066557 | Potato | nucleus | 29.17 | 27.37 |
| PGSC0003DMT400039033 | Potato | nucleus | 25.3 | 27.33 |
| PGSC0003DMT400041637 | Potato | nucleus | 31.85 | 27.16 |
| PGSC0003DMT400088718 | Potato | nucleus | 25.0 | 27.1 |
| PGSC0003DMT400012934 | Potato | nucleus | 24.4 | 27.06 |
| PGSC0003DMT400064307 | Potato | nucleus | 27.98 | 25.9 |
| PGSC0003DMT400031329 | Potato | nucleus | 24.4 | 25.47 |
| PGSC0003DMT400068627 | Potato | nucleus | 23.21 | 25.32 |
| PGSC0003DMT400011487 | Potato | nucleus | 10.71 | 19.57 |
Protein Annotations
| Gene3D:1.10.472.10 | EntrezGene:102605668 | MapMan:13.1.1.1.4 | InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom |
| InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | UniProt:M1B9N5 |
| PFAM:PF00134 | PFAM:PF02984 | EnsemblPlantsGene:PGSC0003DMG400015597 | PGSC:PGSC0003DMG400015597 | EnsemblPlants:PGSC0003DMT400040287 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF206 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI000295B985 | RefSeq:XP_006355943.1 | SEG:seg | : | : | : |
Description
D1-type cyclin [Source:PGSC_GENE;Acc:PGSC0003DMG400015597]
Coordinates
chr5:+:7285840..7289350
Molecular Weight (calculated)
37729.4 Da
IEP (calculated)
4.845
GRAVY (calculated)
-0.132
Length
336 amino acids
Sequence
(BLAST)
(BLAST)
001: MSVSYSDCFS DLLCGEDSDT VFSNGGGEDL PECSSSDIES QFADIDESIA GLIEDERNFV PGYDYIEKFQ SQSLSAAARD ESVAWILKVQ RHYGFQPLTA
101: YLAVNYFDRF LYSRSLPQTN GWPLQLLSVA CLSLAAKMEE PLVPSLLDLQ VEGAKYIFEP KTIQRMEFLV LRILDWRLRS ITPFNFLSFF AAKLDSLGTF
201: TAVLISRASQ IILSNIQEAS FHEYWPSCIA AATILCAAKD LPNFSLVNAE HAESWCHGLR KDKIVGCYEL VQKYAIALRP RRFPRVYPQV RVMTRTSTTT
301: TVASSDSSSS SSSSSSTSYK RRKLNNSWWS VTDDDS
101: YLAVNYFDRF LYSRSLPQTN GWPLQLLSVA CLSLAAKMEE PLVPSLLDLQ VEGAKYIFEP KTIQRMEFLV LRILDWRLRS ITPFNFLSFF AAKLDSLGTF
201: TAVLISRASQ IILSNIQEAS FHEYWPSCIA AATILCAAKD LPNFSLVNAE HAESWCHGLR KDKIVGCYEL VQKYAIALRP RRFPRVYPQV RVMTRTSTTT
301: TVASSDSSSS SSSSSSTSYK RRKLNNSWWS VTDDDS
001: MRSYRFSDYL HMSVSFSNDM DLFCGEDSGV FSGESTVDFS SSEVDSWPGD SIACFIEDER HFVPGHDYLS RFQTRSLDAS AREDSVAWIL KVQAYYNFQP
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
101: LTAYLAVNYM DRFLYARRLP ETSGWPMQLL AVACLSLAAK MEEILVPSLF DFQVAGVKYL FEAKTIKRME LLVLSVLDWR LRSVTPFDFI SFFAYKIDPS
201: GTFLGFFISH ATEIILSNIK EASFLEYWPS SIAAAAILCV ANELPSLSSV VNPHESPETW CDGLSKEKIV RCYRLMKAMA IENNRLNTPK VIAKLRVSVR
301: ASSTLTRPSD ESSFSSSSPC KRRKLSGYSW VGDETSTSN
Arabidopsis Description
CYCD1-1Cyclin-D1-1 [Source:UniProtKB/Swiss-Prot;Acc:P42751]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.