Factsheet for PGSC0003DMT400031329

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 6
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	secretory
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400001218
PGSC0003DMT400008515
PGSC0003DMT400014299
PGSC0003DMT400017807
PGSC0003DMT400018062
PGSC0003DMT400032809
PGSC0003DMT400048460
PGSC0003DMT400056799
PGSC0003DMT400062212
PGSC0003DMT400077428
PGSC0003DMT400080042

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G50070.1	PGSC0003DMT400014299	AT1G52730.1	20706207
AT3G50070.1	PGSC0003DMT400001218	AT2G27970.1	20706207
AT3G50070.1	PGSC0003DMT400048460	AT2G27970.1	20706207
AT3G50070.1	PGSC0003DMT400077428	AT3G48750.1	20706207
AT3G50070.1	PGSC0003DMT400018062	AT3G60750.1	20706207
AT3G50070.1	PGSC0003DMT400056799	AT3G60750.1	20706207
AT3G50070.1	PGSC0003DMT400080042	AT4G09320.1	20706207
AT3G50070.1	PGSC0003DMT400062212	AT4G24820.1	20706207
AT3G50070.1	PGSC0003DMT400008515	AT5G06110.1	20706207
AT3G50070.1	PGSC0003DMT400017807	AT5G40460.1	20706207
AT3G50070.1	PGSC0003DMT400032809	AT5G40460.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400064307	Potato	nucleus	88.82	78.79
Solyc02g092980.2.1	Tomato	nucleus	86.96	77.99
PGSC0003DMT400068629	Potato	cytosol	45.65	61.25
PGSC0003DMT400011487	Potato	nucleus	31.68	55.43
PGSC0003DMT400068627	Potato	nucleus	52.48	54.87
PGSC0003DMT400066557	Potato	nucleus	50.0	44.97
Bra029992.1-P	Field mustard	nucleus	46.58	42.61
CDX83112	Canola	nucleus	46.58	42.61
KRH04529	Soybean	nucleus	49.07	42.59
CDY12825	Canola	nucleus	47.2	42.46
CDY02095	Canola	nucleus	43.17	42.38
Bra012909.1-P	Field mustard	nucleus	43.17	42.38
CDX68573	Canola	nucleus	46.27	42.33
CDY01425	Canola	nucleus	46.27	42.09
KRH57973	Soybean	nucleus	50.0	42.04
CDY23022	Canola	nucleus	42.86	41.95
PGSC0003DMT400039904	Potato	nucleus	41.93	41.93
AT3G50070.1	Thale cress	nucleus	46.89	41.83
KRH77050	Soybean	nucleus, plastid	43.17	41.62
PGSC0003DMT400020648	Potato	nucleus	42.86	41.57
CDY30606	Canola	cytosol, nucleus, plastid	22.05	41.28
Bra012146.1-P	Field mustard	nucleus	45.34	41.24
KRH28424	Soybean	nucleus	41.93	40.3
CDY30607	Canola	nucleus	43.17	39.38
Bra036051.1-P	Field mustard	nucleus	42.86	39.09
CDY17742	Canola	nucleus	42.86	38.87
AT5G67260.2	Thale cress	nucleus	48.45	38.61
PGSC0003DMT400033588	Potato	nucleus	35.71	32.3
PGSC0003DMT400088718	Potato	nucleus	28.26	29.35
GSMUA_AchrUn_...	Banana	cytosol	28.26	28.71
GSMUA_Achr3P13140_001	Banana	nucleus	35.4	28.01
PGSC0003DMT400037827	Potato	nucleus	29.5	27.62
GSMUA_Achr2P05260_001	Banana	nucleus	29.5	27.54
GSMUA_Achr4P20220_001	Banana	nucleus	30.75	27.35
GSMUA_Achr1P09780_001	Banana	cytosol	32.61	27.06
TraesCS5B01G158400.1	Wheat	cytosol	29.19	26.55
GSMUA_Achr3P01010_001	Banana	nucleus	33.54	26.54
HORVU5Hr1G050270.8	Barley	cytosol	28.88	26.5
TraesCS5A01G161000.1	Wheat	cytosol	28.88	26.27
TraesCS5D01G165900.1	Wheat	cytosol	28.88	26.27
Os09t0111100-01	Rice	cytosol	29.19	25.82
PGSC0003DMT400040287	Potato	nucleus	25.47	24.4
PGSC0003DMT400041637	Potato	nucleus	28.88	23.6
Zm00001d019696_P001	Maize	cytosol	27.64	23.0
EER96424	Sorghum	cytosol	27.02	22.77
Zm00001d005293_P001	Maize	cytosol	27.02	22.25
PGSC0003DMT400039033	Potato	nucleus	21.12	21.86
PGSC0003DMT400057686	Potato	cytosol, nucleus, plasma membrane	19.88	21.33
PGSC0003DMT400012934	Potato	nucleus	18.32	19.47

Protein Annotations

Gene3D:1.10.472.10	MapMan:13.1.1.1.4	InterPro:Cyclin-like	InterPro:Cyclin-like_sf	InterPro:Cyclin_C-dom	InterPro:Cyclin_N
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	UniProt:M1AVI6	PFAM:PF00134
PFAM:PF02984	EnsemblPlantsGene:PGSC0003DMG400012007	PGSC:PGSC0003DMG400012007	EnsemblPlants:PGSC0003DMT400031329	PIRSF:PIRSF001771	ScanProsite:PS00292
PANTHER:PTHR10177	PANTHER:PTHR10177:SF242	SMART:SM00385	SMART:SM01332	SUPFAM:SSF47954	UniParc:UPI000295405B

Description

CycD3;1 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012007]

Coordinates

chr00:+:24218376..24219916

Molecular Weight (calculated)

37154.9 Da

IEP (calculated)

4.881

GRAVY (calculated)

-0.052

Length

322 amino acids

Sequence
(BLAST)

001: MVFPSDSQLQ NPISGLVDCL YCDEDHRFLY DDLGEWSSLD VENENVKKTL PLLECDMFWE DDDELATLLS KEKEFHLCFQ SLISDGSRKK ALDWMLRVIS
101: YYNFTATTAV LAVNYFDRFV SELCFQKDKP WMSQLAAVAS LSIAAKMEET QVPLLLDLQV ADSRFVFEAK TIQRMELLVL STLNWKMNLV TPLSFIHHIM
201: RRFGFMTNLH LDFLNKCERL VLDIITDSRL LHYSPSVIAT ASMFYVINEI EPNNAMEYQN QLMSLLKVRK DSLEECHDLI LELMGTSCYN LCQSLKRKYH
301: SVPGSPSGVI LVARARMNHG DQ

Best Arabidopsis Sequence Match ( AT5G67260.1 )
(BLAST)

001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR

Arabidopsis Description

CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.