Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra012909.1-P | Field mustard | nucleus | 98.78 | 98.78 |
| CDY23022 | Canola | nucleus | 97.26 | 96.96 |
| CDX83112 | Canola | nucleus | 85.37 | 79.55 |
| CDX68573 | Canola | nucleus | 84.45 | 78.69 |
| AT3G50070.1 | Thale cress | nucleus | 80.79 | 73.41 |
| CDY30607 | Canola | nucleus | 76.83 | 71.39 |
| CDY17742 | Canola | nucleus | 76.22 | 70.42 |
| CDY30606 | Canola | cytosol, nucleus, plastid | 34.15 | 65.12 |
| CDY01425 | Canola | nucleus | 68.6 | 63.56 |
| CDY12825 | Canola | nucleus | 68.6 | 62.85 |
| KRH04529 | Soybean | nucleus | 53.66 | 47.44 |
| KRH57973 | Soybean | nucleus | 53.35 | 45.69 |
| Solyc02g092980.2.1 | Tomato | nucleus | 49.09 | 44.85 |
| PGSC0003DMT400064307 | Potato | nucleus | 48.48 | 43.8 |
| PGSC0003DMT400031329 | Potato | nucleus | 42.38 | 43.17 |
| KRH77050 | Soybean | nucleus, plastid | 43.9 | 43.11 |
| KRH28424 | Soybean | nucleus | 43.9 | 42.99 |
| PGSC0003DMT400068629 | Potato | cytosol | 31.1 | 42.5 |
| CDX75405 | Canola | nucleus | 46.65 | 41.02 |
| CDY69708 | Canola | nucleus | 46.65 | 40.91 |
| CDX72453 | Canola | nucleus | 44.82 | 40.83 |
| CDY49278 | Canola | nucleus | 45.73 | 40.65 |
| CDX76265 | Canola | nucleus | 44.82 | 40.27 |
| CDY57741 | Canola | nucleus | 44.51 | 40.0 |
| Solyc02g064900.1.1 | Tomato | nucleus | 41.46 | 39.31 |
| Solyc02g064860.1.1 | Tomato | nucleus | 26.83 | 37.45 |
| Solyc02g064910.1.1 | Tomato | nucleus | 26.22 | 36.6 |
| PGSC0003DMT400068627 | Potato | nucleus | 34.15 | 36.36 |
| PGSC0003DMT400011487 | Potato | nucleus | 18.9 | 33.7 |
| CDX81286 | Canola | nucleus | 25.3 | 31.2 |
| CDY13755 | Canola | nucleus | 27.74 | 31.16 |
| CDY38800 | Canola | nucleus | 30.18 | 31.03 |
| CDY11608 | Canola | nucleus | 29.88 | 30.91 |
| CDY54717 | Canola | nucleus | 24.7 | 30.45 |
| CDY67142 | Canola | nucleus | 30.79 | 29.79 |
| GSMUA_AchrUn_... | Banana | cytosol | 28.66 | 29.65 |
| HORVU5Hr1G050270.8 | Barley | cytosol | 30.79 | 28.77 |
| TraesCS5B01G158400.1 | Wheat | cytosol | 30.79 | 28.53 |
| GSMUA_Achr1P09780_001 | Banana | cytosol | 33.54 | 28.35 |
| CDY59943 | Canola | nucleus | 31.1 | 28.25 |
| TraesCS5D01G165900.1 | Wheat | cytosol | 30.49 | 28.25 |
| TraesCS5A01G161000.1 | Wheat | cytosol | 30.49 | 28.25 |
| GSMUA_Achr4P20220_001 | Banana | nucleus | 31.1 | 28.18 |
| GSMUA_Achr2P05260_001 | Banana | nucleus | 29.57 | 28.12 |
| Os09t0111100-01 | Rice | cytosol | 31.1 | 28.02 |
| CDX76917 | Canola | nucleus | 29.57 | 27.4 |
| GSMUA_Achr3P01010_001 | Banana | nucleus | 33.54 | 27.03 |
| CDY14561 | Canola | cytosol | 26.52 | 26.77 |
| CDY08795 | Canola | nucleus | 25.0 | 26.62 |
| GSMUA_Achr3P13140_001 | Banana | nucleus | 32.93 | 26.54 |
| CDX89480 | Canola | nucleus | 28.66 | 26.48 |
| CDY25602 | Canola | nucleus | 28.66 | 26.4 |
| CDX97009 | Canola | nucleus | 23.48 | 26.28 |
| CDX69832 | Canola | nucleus | 23.78 | 26.26 |
| CDY33959 | Canola | nucleus | 24.39 | 26.23 |
| CDY37828 | Canola | nucleus | 24.7 | 26.21 |
| Zm00001d019696_P001 | Maize | cytosol | 30.18 | 25.58 |
| EER96424 | Sorghum | cytosol | 28.96 | 24.87 |
| Zm00001d005293_P001 | Maize | cytosol | 28.96 | 24.3 |
| CDY29570 | Canola | nucleus | 22.87 | 22.46 |
| CDX72643 | Canola | nucleus | 22.56 | 21.76 |
| CDY22116 | Canola | nucleus | 19.51 | 21.48 |
| CDY21951 | Canola | nucleus | 19.51 | 21.19 |
| CDY55121 | Canola | cytosol | 21.95 | 20.99 |
| CDY40332 | Canola | cytosol | 20.73 | 20.0 |
| CDY10467 | Canola | cytosol | 20.43 | 19.76 |
| CDX90892 | Canola | nucleus | 8.54 | 18.42 |
| CDX80803 | Canola | cytosol | 22.26 | 16.19 |
Protein Annotations
| Gene3D:1.10.472.10 | MapMan:13.1.1.1.4 | GO:A0A078EJ71 | EnsemblPlants:CDY02095 | ProteinID:CDY02095 | ProteinID:CDY02095.1 |
| InterPro:Cyclin-like | InterPro:Cyclin-like_sf | InterPro:Cyclin_C-dom | InterPro:Cyclin_N | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | EnsemblPlantsGene:GSBRNA2T00113475001 | PFAM:PF00134 | PFAM:PF02984 | PIRSF:PIRSF001771 |
| ScanProsite:PS00292 | PANTHER:PTHR10177 | PANTHER:PTHR10177:SF216 | SMART:SM00385 | SMART:SM01332 | SUPFAM:SSF47954 |
| UniParc:UPI0004EE152D | SEG:seg | : | : | : | : |
Description
BnaA03g40720D
Coordinates
chrLK031932:+:95515..96959
Molecular Weight (calculated)
37958.6 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.166
Length
328 amino acids
Sequence
(BLAST)
(BLAST)
001: MALEEEEETQ NAPFCMLFCE EESCSVFEED ESVVKSPSFH LGFLHHDMLW DDDELLGLIS KQDELKPCLS DKALDEFLSL CRENALGWIF RVKGYYGFSS
101: LTALLAVNYF DRFITSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGEARYV FEAKTIQRME LLILSTLQWR MHPVTPISFF DHIIRRYSSN
201: SRQFLSRCES LLLSIVHDSR FLSYTPSVLA TAIMVSVARD FKEAEYESQL MTLLKVDPEK VNKCYELVLD HNPSKKRVMH ASLSSDGSNE SWVVSSEPLY
301: KRRRVHEQQM KLSSINRMFL DVFTSSPR
101: LTALLAVNYF DRFITSRKFQ TDKPWMSQLT AVACLSLAAK VEEIRVPLLL DLQVGEARYV FEAKTIQRME LLILSTLQWR MHPVTPISFF DHIIRRYSSN
201: SRQFLSRCES LLLSIVHDSR FLSYTPSVLA TAIMVSVARD FKEAEYESQL MTLLKVDPEK VNKCYELVLD HNPSKKRVMH ASLSSDGSNE SWVVSSEPLY
301: KRRRVHEQQM KLSSINRMFL DVFTSSPR
001: MALEKEEEAS QNGAFCVLDG LYCEEETGFV EDDLDDDGDL DFLEKSDESV VKFQFLPLLD MFLWDDDEIL SLISKENETN PCFGEQILDG FLVSCRKEAL
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR
101: DWVLRVKSHY GFTSLTAILA VNYFDRFMTS IKLQTDKPWM SQLVAVASLS LAAKVEEIQV PLLLDLQVEE ARYLFEAKTI QRMELLILST LQWRMHPVTP
201: ISFFDHIIRR FGSKWHQQLD FCRKCERLLI SVIADTRFMR YFPSVLATAI MILVFEELKP CDEVEYQSQI TTLLKVNQEK VNECYELLLE HNPSKKRMMN
301: LVDQDSPSGV LDFDDSSNSS WNVSTTASVS SSSSSPEPLL KRRRVQEQQM RLPSINRMFL DVLSSPR
Arabidopsis Description
CYCD3;2CYCLIN D3;2 [Source:TAIR;Acc:AT5G67260]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.