CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53764	Canola	extracellular, vacuole	86.36	26.27
Bra038015.1-P	Field mustard	nucleus	98.48	21.35
AT1G55820.1	Thale cress	nucleus	74.24	17.04
CDY53767	Canola	nucleus	71.21	15.28
CDY24202	Canola	nucleus	34.09	7.98
CDY43361	Canola	nucleus	31.06	7.08
CDY28028	Canola	nucleus	27.27	4.46
CDY22126	Canola	nucleus	27.27	4.4
CDY35953	Canola	nucleus	25.76	4.17
CDX99817	Canola	nucleus	15.15	3.23
CDY61561	Canola	cytosol	1.52	3.03
CDX78828	Canola	nucleus	15.91	3.01
CDX84653	Canola	nucleus	18.18	2.95
CDY61562	Canola	nucleus	16.67	2.89
CDY65326	Canola	nucleus	18.18	2.82
CDX97535	Canola	nucleus	18.18	2.78
CDY43685	Canola	nucleus	17.42	2.77
CDX76544	Canola	nucleus	11.36	2.64
CDY08888	Canola	nucleus	11.36	2.6
CDY61669	Canola	nucleus	14.39	2.57
CDY39087	Canola	nucleus	16.67	2.52
CDX94662	Canola	nucleus	15.15	2.48
CDX90188	Canola	nucleus	15.15	2.43
CDY33258	Canola	nucleus	15.91	2.41
CDY43334	Canola	nucleus	14.39	2.31
CDY48333	Canola	nucleus	14.39	2.31
CDY11787	Canola	nucleus	12.88	2.31
CDY15632	Canola	nucleus	13.64	2.29
Os09t0261400-01	Rice	plasma membrane	0.76	1.25
CDY37665	Canola	cytosol, nucleus, plastid	1.52	0.3
GSMUA_Achr1P09430_001	Banana	cytosol	0.0	0.0

Protein Annotations

EnsemblPlants:CDY72379	EnsemblPlantsGene:GSBRNA2T00028206001	PANTHER:PTHR12758	PANTHER:PTHR12758:SF30	ProteinID:CDY72379	ProteinID:CDY72379.1
SEG:seg	UniParc:UPI0004EEACC7	UniProt:A0A078K0C1	MapMan:35.1	:	:

Description

BnaAnng40910DBnaAnng40910D protein (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A078K0C1]

Coordinates

chrLK050666:-:1483..2149

Molecular Weight (calculated)

13919.3 Da

IEP (calculated)

6.894

GRAVY (calculated)

-0.500

Length

132 amino acids

Sequence
(BLAST)

001: GDNENPPTTN PSQHASSTVV THIPSATALN SIHSEERTSA MTGNAGAWIG QGLGNLQMYN LALQGQPLGF PVVQAGHRGL MGIHQPSQPM PAPSTTYQTL
101: TPLPPTTAMA EPIRHPNIAH QQPQAAVTNN NY

Best Arabidopsis Sequence Match ( AT1G55820.1 )
(BLAST)

001: MSSSDGGSSR VSIPYHLRKT LQKIREYTGK QHSDEDIFAV YKDSFNDPHE TAQKLLFLDT FHEVRSKREK KKEPIVPVTQ PSGRGGRRNF ASSNSYQGSG
101: RNASFKRENG ANHVTRGSRT AQPATNKASN ITVPNETKVS GPASIPSEVS NHKAQDDPSL ISASRCSSKS DQAIEIETAS KQGKNQSLPK PDVSEQSHVT
201: FPFHLQVAKG LQNGLTFGSF DSNFVKEVSS SNGASGGYDS NFESSHGTGD DERESSPTTN GITGVASARE ETSTVSEDKD YGISNSATGA EPVVHSDHIV
301: PPVEEVPKEE ALSNTETHQI AYGQEAPLSV FGLVPSLSAI GQPVNTEAAE TQPGNSNSPP ISLVSYPPDQ SSIAAATQQT NFLRQQYPPN FFPYGYYSPY
401: YMPPPYIHQF LSPNGIPQQS YFPQGAALTA PSHAKPVDNT ENPPTTNPYL HTSPMVASSI PSTTTLNSIH SEEKASHLTE SAAAWIGQGF GNLQVNPMYN
501: LAYQGQPLGF PVVQAGHGGL MGMHQPTQPM AAASTTYQTL PPPPHTTTAM GEPIGHPHIA YQQPQAALTN WVNNY

Arabidopsis Description

GIP1LGBF-interacting protein 1-like [Source:UniProtKB/Swiss-Prot;Acc:A4FVR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.