Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65326 | Canola | nucleus | 94.09 | 95.42 |
| Bra027380.1-P | Field mustard | nucleus | 97.22 | 93.02 |
| CDY33258 | Canola | nucleus | 79.37 | 78.65 |
| CDY39087 | Canola | nucleus | 78.79 | 77.89 |
| AT3G13990.1 | Thale cress | nucleus | 75.78 | 77.12 |
| VIT_04s0043g00960.t01 | Wine grape | mitochondrion | 16.8 | 56.64 |
| VIT_09s0002g01530.t01 | Wine grape | nucleus | 49.48 | 52.78 |
| KRH47571 | Soybean | nucleus | 49.59 | 49.59 |
| KRH06147 | Soybean | nucleus | 48.67 | 48.84 |
| Solyc12g049230.1.1 | Tomato | nucleus | 42.29 | 46.26 |
| GSMUA_Achr3P07830_001 | Banana | nucleus | 37.54 | 38.16 |
| GSMUA_Achr3P20190_001 | Banana | nucleus | 30.13 | 33.59 |
| CDY61561 | Canola | cytosol | 2.43 | 31.82 |
| EER88029 | Sorghum | nucleus | 31.29 | 31.43 |
| Zm00001d044979_P010 | Maize | nucleus | 30.82 | 31.22 |
| Os06t0206100-01 | Rice | nucleus | 30.71 | 31.03 |
| TraesCS7D01G167400.1 | Wheat | cytosol, nucleus | 30.82 | 30.72 |
| Zm00001d037122_P009 | Maize | nucleus | 30.01 | 30.12 |
| TraesCS7B01G071400.2 | Wheat | nucleus | 30.24 | 30.03 |
| HORVU7Hr1G034850.1 | Barley | cytosol, nucleus, plastid | 29.9 | 29.93 |
| TraesCS7A01G166800.4 | Wheat | nucleus | 30.59 | 29.8 |
| Os03t0411000-01 | Rice | nucleus | 26.19 | 29.31 |
| KXG39164 | Sorghum | nucleus | 25.61 | 28.19 |
| Zm00001d029487_P001 | Maize | nucleus | 23.52 | 27.51 |
| CDY28028 | Canola | nucleus | 19.12 | 20.42 |
| CDY22126 | Canola | nucleus | 18.89 | 19.9 |
| CDY35953 | Canola | nucleus | 18.66 | 19.75 |
| CDY43361 | Canola | nucleus | 12.98 | 19.34 |
| CDY24202 | Canola | nucleus | 12.51 | 19.15 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 2.78 | 18.18 |
| CDY08888 | Canola | nucleus | 12.05 | 18.02 |
| CDX78828 | Canola | nucleus | 14.48 | 17.91 |
| CDY43685 | Canola | nucleus | 16.8 | 17.47 |
| CDX84653 | Canola | nucleus | 16.45 | 17.47 |
| CDY43334 | Canola | nucleus | 16.57 | 17.4 |
| CDY15632 | Canola | nucleus | 15.76 | 17.3 |
| CDX90188 | Canola | nucleus | 16.45 | 17.27 |
| CDY61669 | Canola | nucleus | 14.72 | 17.16 |
| CDX94662 | Canola | nucleus | 15.87 | 17.02 |
| CDX76544 | Canola | nucleus | 11.01 | 16.7 |
| CDY61562 | Canola | nucleus | 14.6 | 16.54 |
| CDY48333 | Canola | nucleus | 15.53 | 16.28 |
| CDY53767 | Canola | nucleus | 11.24 | 15.77 |
| CDY53764 | Canola | extracellular, vacuole | 7.76 | 15.44 |
| CDX99817 | Canola | nucleus | 10.08 | 14.03 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 10.2 | 13.13 |
| CDY11787 | Canola | nucleus | 7.88 | 9.23 |
Protein Annotations
| EnsemblPlants:CDX97535 | EnsemblPlantsGene:GSBRNA2T00104745001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF28 | PFAM:PF06972 | ProteinID:CDX97535 | ProteinID:CDX97535.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EDE696 | MapMan:35.2 | : | : |
Description
BnaA05g25440D
Coordinates
chrLK031900:-:176290..181116
Molecular Weight (calculated)
94057.8 Da
IEP (calculated)
7.388
GRAVY (calculated)
-0.894
Length
863 amino acids
Sequence
(BLAST)
(BLAST)
001: MVSGSRTGGN RAMDDGDRKL IESIREIVGN HTDADIYAAL KEADMNADEA VQKLIHQDPF HEVKRRRDRK KEVAVLVEPA DEKKPLESVT SEVNVRTQPE
101: HNARRGGYSR NNTAPRNEFP RNAAPRNENA APRNAFPRAT GSKREFRVVR DNRSNPNVGE ELKHTSAHQS SGLDISKVMA SQDQKGLTGG FGNRRSPGDQ
201: DFSEACNASA DVRLRDAEIA PLHHPTRKEL SDGKRTARSV TLPSTNSVIG VYPSSTDPVH VPSPVSRSSP VGAIKREVRG GGFGGKPSEN VGKDPSACAG
301: SLSGSSIRKI GTPNAHRSSS PNSKIDQVSQ TTLRESVLPS GGEKNRPVLN RQRGNRGSQN ARTQQVGGHT KGVSQNKEWK PKLIQKSVGH NPGVIGTPAK
401: SQACRSDDIS SNLESEAAKV QDKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF SSSVNSESAF QESCSLEELR ETDRSSPVSS PETLTDSPGD
501: KPIDIRDDHV RVSESDSRVP VASEHQLPEE KEAHRSDNLD EYSEIQLLNR NGPHYTPLEF EEQQDPPELQ KAPAYGNHGS YDSPYENVRG QGLPSQQEVL
601: STQMVNNGPS STIPMLQQQQ QQQQQQASMQ QMYPQVQVAH FPNLMPYRQF VSYVPQMPMP GYSGNPAAYA HPSNGNSYVL MPGGGSHPGS NGVKYGIQQF
701: KPVPTGGPTG FGTYNNNPNA YQINTPNVVG NAMGLEDPSR MKYKDGNIYV QNPQQPETSD IWMQNPRDLS SLQSPPYYNV AGQTPHGAYL PSHTSHPSFN
801: AAAQSPQMQF QGLFHPPQPG AMANQHHMGP GLGGNVGVVP SPPSQLGAYQ QSQLGHPNWG ANF
101: HNARRGGYSR NNTAPRNEFP RNAAPRNENA APRNAFPRAT GSKREFRVVR DNRSNPNVGE ELKHTSAHQS SGLDISKVMA SQDQKGLTGG FGNRRSPGDQ
201: DFSEACNASA DVRLRDAEIA PLHHPTRKEL SDGKRTARSV TLPSTNSVIG VYPSSTDPVH VPSPVSRSSP VGAIKREVRG GGFGGKPSEN VGKDPSACAG
301: SLSGSSIRKI GTPNAHRSSS PNSKIDQVSQ TTLRESVLPS GGEKNRPVLN RQRGNRGSQN ARTQQVGGHT KGVSQNKEWK PKLIQKSVGH NPGVIGTPAK
401: SQACRSDDIS SNLESEAAKV QDKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF SSSVNSESAF QESCSLEELR ETDRSSPVSS PETLTDSPGD
501: KPIDIRDDHV RVSESDSRVP VASEHQLPEE KEAHRSDNLD EYSEIQLLNR NGPHYTPLEF EEQQDPPELQ KAPAYGNHGS YDSPYENVRG QGLPSQQEVL
601: STQMVNNGPS STIPMLQQQQ QQQQQQASMQ QMYPQVQVAH FPNLMPYRQF VSYVPQMPMP GYSGNPAAYA HPSNGNSYVL MPGGGSHPGS NGVKYGIQQF
701: KPVPTGGPTG FGTYNNNPNA YQINTPNVVG NAMGLEDPSR MKYKDGNIYV QNPQQPETSD IWMQNPRDLS SLQSPPYYNV AGQTPHGAYL PSHTSHPSFN
801: AAAQSPQMQF QGLFHPPQPG AMANQHHMGP GLGGNVGVVP SPPSQLGAYQ QSQLGHPNWG ANF
001: MVTGSRTSGN RGVGLDDEAK KMIQSIKEVV DSHSDADIYT ALKEANMDAN EAVEKLIHQD PFHEVKRKRD RKKEDTVFVE PANIKKPLEN VTSEVKVRTQ
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
101: PEHNVRRGGY SRNFFPRNAA QRNASPRNPA TGSNKEFRVV RDNRSNPNVD EELKHSSAQS SGSNINKVVA TVNKLGSRGG LGNRNSSGAQ DSTDECNAPA
201: DARLRQAEIR PLHCPVNKEL GGVTLPSTNS VLGVYSSSKD PVHVPSPVSR SSPVGAIKRE VRGGGLGGKP SENVGKDPSV PSFSGSSIRK NGPPNAHRPS
301: SPTSKIDHSR TTARESVMPS GVEKNRSYLN RQRGNRGSQY ARTQQVGGHT KGASQNKEWK PKSNQKPVGH NPGVIGTPTK SQARRPADNS INVETEAVKL
401: QNKLSHVHIS ESQNVIIADH IRVPETDRCQ LTFGSFVQEF NSSRNSESAF EESHSSEEVR ESDRSSPVTC PEASADGPGV LPITIDDHVR VSRSDSPVSA
501: VSEPQLPEQK ETHRSDNLDA YSGIELLNRN GPPYTPLEFE QQQDPPELQK FSAYDNHGSY EFPYFSPAMD ETVRVQGLPS PHEQGLSAHM LNNAPPSTIP
601: MLQQQQQASM QQMYPQVHVS HFPNLMPYRQ FLSPVYVPQM PMPGYSGNPA AYAHPSNGNS YVLMPGGGSH LGSNGVKYGI HQQYKPVPTG GPAGFGTYNN
701: PNGYPTNPPN VVGNATGLED PSRMINKHGN IYVPNPQAET SEIWMQNPRD LSSLQSPYYN VAGQSPHGAY LSSHTAHQSF NPTAQSSHMQ FQGLFHPSQP
801: GTMANPHHMG PGLSGNVGVG VVPSPPPSQI GTYQQSQLGH PNWPSNF
Arabidopsis Description
AT3g13990/MDC16_11 [Source:UniProtKB/TrEMBL;Acc:Q8L7T4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.