Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra040021.1-P | Field mustard | nucleus | 98.29 | 97.93 |
| CDY28028 | Canola | nucleus | 80.71 | 81.81 |
| CDY35953 | Canola | nucleus | 81.32 | 81.72 |
| AT3G07660.1 | Thale cress | nucleus | 80.59 | 78.48 |
| KRH16977 | Soybean | nucleus | 50.67 | 47.27 |
| KRH72609 | Soybean | nucleus | 50.06 | 46.38 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 50.67 | 46.32 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 44.69 | 43.62 |
| CDY61561 | Canola | cytosol | 3.42 | 42.42 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 44.93 | 41.96 |
| Solyc07g045230.2.1 | Tomato | nucleus | 44.69 | 41.78 |
| Solyc05g018750.2.1 | Tomato | nucleus | 40.78 | 40.93 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 26.13 | 40.07 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 41.88 | 39.79 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 37.85 | 37.62 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 37.73 | 37.5 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 29.18 | 37.23 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 37.36 | 37.14 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 37.24 | 34.23 |
| KXG24955 | Sorghum | nucleus | 32.11 | 32.35 |
| Zm00001d050112_P011 | Maize | nucleus | 32.23 | 31.17 |
| CDY72379 | Canola | cytosol, nucleus, plastid | 4.4 | 27.27 |
| CDY24202 | Canola | nucleus | 16.97 | 24.65 |
| CDY53764 | Canola | extracellular, vacuole | 12.94 | 24.42 |
| CDY43361 | Canola | nucleus | 16.61 | 23.49 |
| CDY53767 | Canola | nucleus | 17.34 | 23.09 |
| CDY15632 | Canola | nucleus | 19.29 | 20.1 |
| CDX78828 | Canola | nucleus | 17.09 | 20.06 |
| CDY61669 | Canola | nucleus | 18.07 | 20.0 |
| CDY65326 | Canola | nucleus | 19.9 | 19.15 |
| CDX94662 | Canola | nucleus | 18.68 | 19.01 |
| CDX84653 | Canola | nucleus | 18.8 | 18.94 |
| CDX97535 | Canola | nucleus | 19.9 | 18.89 |
| CDX90188 | Canola | nucleus | 18.8 | 18.73 |
| CDY08888 | Canola | nucleus | 13.19 | 18.72 |
| CDY48333 | Canola | nucleus | 18.8 | 18.71 |
| CDY43685 | Canola | nucleus | 18.93 | 18.67 |
| CDY43334 | Canola | nucleus | 18.68 | 18.61 |
| CDX76544 | Canola | nucleus | 12.58 | 18.1 |
| CDY33258 | Canola | nucleus | 18.68 | 17.57 |
| CDY39087 | Canola | nucleus | 18.68 | 17.53 |
| CDY61562 | Canola | nucleus | 15.63 | 16.8 |
| CDX99817 | Canola | nucleus | 12.58 | 16.61 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 12.82 | 15.67 |
| CDY11787 | Canola | nucleus | 10.13 | 11.26 |
Protein Annotations
| EnsemblPlants:CDY22126 | EnsemblPlantsGene:GSBRNA2T00018516001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | ProteinID:CDY22126 | ProteinID:CDY22126.1 |
| SEG:seg | SUPFAM:SSF46934 | UniParc:UPI0004EEB10A | UniProt:A0A078G9Q9 | MapMan:35.2 | : |
Description
BnaC01g39750DBnaC01g39750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9Q9]
Coordinates
chrLK032128:-:35890..41152
Molecular Weight (calculated)
87501.9 Da
IEP (calculated)
6.872
GRAVY (calculated)
-0.746
Length
819 amino acids
Sequence
(BLAST)
(BLAST)
001: MVGGGGGGGG ARVSIPAKTR KTIQTIKEIT AGNYSEEEIH AMLLECNMNP DEATQRLLLQ DPFLEVKKKR DKRKENLTNK DSVEPQWRSA GPGRGGRGGR
101: VNFSSRHSSH DGAGSKNSFR KENGPKQVTD PSASTSQETK TKDNAVSSHS AVMDKTSDVH HPSNRPARSG QGKATGSSVP SNSIESSKNR LALGVNEQKS
201: AGSLPLPRPS SSEVRFTPKS VGEQTVHEQH MGESKFHNRA RGVVKTAVND AYVPRPASSH SNSTGSRPSS NYSNRSHQSV AQRGKEWKPK PVNHNTTQGS
301: VASATAETLV VPTEASEKSA EDVVPSAEDT SRLERQLEDL QIQRQHVIIP NHILVPEAER TKFSFGSFDA GFSITSSSVA FPETEKISVP LSQNSPEVEE
401: EDLSHPTVIS TEKEEDNNVY SESPSQVPND MAGEGITATD AAAPEYDVSK QENMLESEGN QNSFDHVPSN ITGIAPPAPG SQLPQFENAD PQARDALRIP
501: NFVVQQPFDT ASYYAQFYRP GPDSDGRVSP FAASKFNGNV TGLPPRSSQT MQEGGNNLVM STASPTPLAT QAAGLMQSSL PVTQQPVPVF RPPGLHMSHY
601: PPNYMPYGHY FSPFYPPLPT MHPFLSNGAF PQQPQASGVY HTPPPPGAAA PGGKYTLPHY KPGTNAGNLA HVGMPGGYGP SYGSFPAGYN PSSAASAGNS
701: NSNEDLSTLQ LKENNGYNTT GQQSEALPVW IAGPGRDVPS SFYGLQHHGQ HVTYAPAQAG HVAFPGMYHP GQAVTAPGGV HHPLLQQSQG GVAGGEMVAP
801: GPNVFQQPQQ TQMNWPSNY
101: VNFSSRHSSH DGAGSKNSFR KENGPKQVTD PSASTSQETK TKDNAVSSHS AVMDKTSDVH HPSNRPARSG QGKATGSSVP SNSIESSKNR LALGVNEQKS
201: AGSLPLPRPS SSEVRFTPKS VGEQTVHEQH MGESKFHNRA RGVVKTAVND AYVPRPASSH SNSTGSRPSS NYSNRSHQSV AQRGKEWKPK PVNHNTTQGS
301: VASATAETLV VPTEASEKSA EDVVPSAEDT SRLERQLEDL QIQRQHVIIP NHILVPEAER TKFSFGSFDA GFSITSSSVA FPETEKISVP LSQNSPEVEE
401: EDLSHPTVIS TEKEEDNNVY SESPSQVPND MAGEGITATD AAAPEYDVSK QENMLESEGN QNSFDHVPSN ITGIAPPAPG SQLPQFENAD PQARDALRIP
501: NFVVQQPFDT ASYYAQFYRP GPDSDGRVSP FAASKFNGNV TGLPPRSSQT MQEGGNNLVM STASPTPLAT QAAGLMQSSL PVTQQPVPVF RPPGLHMSHY
601: PPNYMPYGHY FSPFYPPLPT MHPFLSNGAF PQQPQASGVY HTPPPPGAAA PGGKYTLPHY KPGTNAGNLA HVGMPGGYGP SYGSFPAGYN PSSAASAGNS
701: NSNEDLSTLQ LKENNGYNTT GQQSEALPVW IAGPGRDVPS SFYGLQHHGQ HVTYAPAQAG HVAFPGMYHP GQAVTAPGGV HHPLLQQSQG GVAGGEMVAP
801: GPNVFQQPQQ TQMNWPSNY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.