Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc05g018750.2.1 | Tomato | nucleus | 62.21 | 66.79 |
| VIT_12s0057g01290.t01 | Wine grape | nucleus | 56.51 | 55.25 |
| KRH16977 | Soybean | nucleus | 52.4 | 52.28 |
| KRH72609 | Soybean | nucleus | 52.28 | 51.81 |
| Os09t0261400-01 | Rice | plasma membrane | 4.68 | 51.25 |
| GSMUA_Achr7P06080_001 | Banana | nucleus | 43.26 | 45.17 |
| GSMUA_Achr3P12040_001 | Banana | nucleus | 45.21 | 45.15 |
| Bra029667.1-P | Field mustard | nucleus | 42.35 | 44.92 |
| Bra040021.1-P | Field mustard | nucleus | 42.12 | 44.89 |
| CDY28028 | Canola | nucleus | 41.32 | 44.8 |
| AT3G07660.1 | Thale cress | nucleus | 42.92 | 44.71 |
| CDY22126 | Canola | nucleus | 41.78 | 44.69 |
| CDY35953 | Canola | nucleus | 41.55 | 44.66 |
| HORVU5Hr1G052360.1 | Barley | cytosol, nucleus | 26.48 | 43.45 |
| GSMUA_Achr1P19270_001 | Banana | nucleus | 42.35 | 43.04 |
| TraesCS5A01G170600.1 | Wheat | nucleus | 39.95 | 42.48 |
| TraesCS5D01G175100.1 | Wheat | nucleus | 39.61 | 42.11 |
| TraesCS5B01G167400.1 | Wheat | nucleus | 39.61 | 42.11 |
| HORVU5Hr1G052340.1 | Barley | cytosol | 39.38 | 38.72 |
| GSMUA_Achr1P09420_001 | Banana | cytosol, nucleus, peroxisome | 27.97 | 38.16 |
| KXG24955 | Sorghum | nucleus | 33.56 | 36.16 |
| Zm00001d050112_P011 | Maize | nucleus | 33.9 | 35.06 |
| Solyc12g049230.1.1 | Tomato | nucleus | 21.58 | 23.95 |
| Solyc02g071180.2.1 | Tomato | nucleus | 20.32 | 21.37 |
| Solyc03g005750.2.1 | Tomato | nucleus | 20.09 | 20.88 |
| Solyc09g018250.2.1 | Tomato | plastid | 2.4 | 19.81 |
Protein Annotations
| EnsemblPlants:Solyc07g045230.2.1 | EnsemblPlantsGene:Solyc07g045230.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF13 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| UniParc:UPI000276CA0A | UniProt:K4CET0 | MapMan:35.1 | : | : | : |
Description
No Description!
Coordinates
chr7:-:58334976..58345622
Molecular Weight (calculated)
92831.9 Da
IEP (calculated)
7.165
GRAVY (calculated)
-0.646
Length
876 amino acids
Sequence
(BLAST)
(BLAST)
001: MSNSGIVGGL ARVSIPSGMR KTIQNIKEIT GNHGEDEIYA MLKECSMDPN ETTQKLLSQD TFHEVKSKRD RRKENSIKES AEPKWKPGMQ GRGNKGIRGN
101: LTSRHASHDV GGGKNGQNNI ANQILDKSVN LSTVVDVEAK NISSSSSAAV NGPSDLASGS NSIIQNAHAS PKREVKQFEA NTGMQTTSAD STKNRSATGN
201: KDVHGQRMPN TGNSSRMLSS PSPTGAYLSA SDPVLLPSQN SRPAGVVGTV RREVGPQYSG VEHVSPKSNG SKKTTVAVST VGSSNIQVKT PSKFQGPGKN
301: QLPEYSQTAS STHSGSSSSR PSSNYNNRSH TVGPLKGPFK EWKPKPVNSN LAQGSTLAAA ASSSGVSTVS VEVNTLSQAP ASVPETKEVT EDLQKKLEKS
401: HISDVENVII PNHLHVPESE KLGFCFGSFD SGFSLGTSTN IAPEHDGSPP LSESSESIEE AASAQLPSNQ NASAAAEETD YPDQPPSSHG QESLPAKGDG
501: NISSSAPECS EPKQESLPAG QQYSVVHTSP NYNFGFAPPM LTNQLPPFEN SESQPRDVSR LPNFLVQHPI DPSYYPHFYR SSADSDGRIS PFHSAGVSTQ
601: YNVAVGPPHT SQSPQEGGNS PALSAAAPTP LVTQAAGLMQ SSIAVPQQPI PVFRQATGMH LPHYPPNFIP YGHYFSPFYV PPAAIHQFLS NGAFSQQPQA
701: GGIYPPPQSA VPRYSLSQYR PGANVGNPAH MGVPGTYAPY GSSPVNYNPS SSTTTGNPAS NEDLFASQFQ ESNVYVSGQQ SESSGVWINA HNRDLSSLQA
801: SSFYNLPQGQ VALTPTQPGH GTFAGVYHPA QPVTASTVHP LLQQSQTIAG PVDMVGPTGN VYQRPQHAQM NWPSSY
101: LTSRHASHDV GGGKNGQNNI ANQILDKSVN LSTVVDVEAK NISSSSSAAV NGPSDLASGS NSIIQNAHAS PKREVKQFEA NTGMQTTSAD STKNRSATGN
201: KDVHGQRMPN TGNSSRMLSS PSPTGAYLSA SDPVLLPSQN SRPAGVVGTV RREVGPQYSG VEHVSPKSNG SKKTTVAVST VGSSNIQVKT PSKFQGPGKN
301: QLPEYSQTAS STHSGSSSSR PSSNYNNRSH TVGPLKGPFK EWKPKPVNSN LAQGSTLAAA ASSSGVSTVS VEVNTLSQAP ASVPETKEVT EDLQKKLEKS
401: HISDVENVII PNHLHVPESE KLGFCFGSFD SGFSLGTSTN IAPEHDGSPP LSESSESIEE AASAQLPSNQ NASAAAEETD YPDQPPSSHG QESLPAKGDG
501: NISSSAPECS EPKQESLPAG QQYSVVHTSP NYNFGFAPPM LTNQLPPFEN SESQPRDVSR LPNFLVQHPI DPSYYPHFYR SSADSDGRIS PFHSAGVSTQ
601: YNVAVGPPHT SQSPQEGGNS PALSAAAPTP LVTQAAGLMQ SSIAVPQQPI PVFRQATGMH LPHYPPNFIP YGHYFSPFYV PPAAIHQFLS NGAFSQQPQA
701: GGIYPPPQSA VPRYSLSQYR PGANVGNPAH MGVPGTYAPY GSSPVNYNPS SSTTTGNPAS NEDLFASQFQ ESNVYVSGQQ SESSGVWINA HNRDLSSLQA
801: SSFYNLPQGQ VALTPTQPGH GTFAGVYHPA QPVTASTVHP LLQQSQTIAG PVDMVGPTGN VYQRPQHAQM NWPSSY
001: MVGSGARVSI SATTRKMIQN IKETTAGNYS EDEIIAMLHE CNMDPDETAQ RLLLQDPFHE VKKKRDKRKE NINNKDSAES QWRSGGGGRG SRGGRMNFSS
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
101: RHASNDVAGA KNSFKKENGP KQVIDPSTST SQEIKTKDIA LVSSHSAVMD KSTVGPKSGS SDVRQSSNLP AGSGQLKAGR SSVPSNNIDG APSSVELSKN
201: RVAVGSRVVH TEQKAVDSLP LPRPSSSEVR FTSSNPKSEQ TAPEQHIGES KSHTRSRGVG KTAVNDTYGS RPASSHSNST GSRPSSNYSN RSHQTVGPQR
301: GAGSIKEWKP KPVVNHNTTQ GSGASSTGET LAVPTEASDK SVEDATPSAE ATSRLQRQLE DLQIQRQHVI IPNHILVPEA ERTKLSFGSF DADFSITSST
401: VAFPQSEKRS APLSHNSQEV EESFAEEEFR HPTVHSIEKE EDGNVYSESP SQVPDNMAGE GNTATNTAPE YDVTKQENML ESESNQNSFD QVPSNIIGIV
501: PPAPGNQHPQ FETSDPQARD ALRLPSFMGQ QPFDTASYYA QFYRSGPDSD GRVSPFVSPG VASKFNGITV LPPHSSQTMQ EGGNNLVLST ASPPPLVTQA
601: AGLMQSSIPV TQQPVPVFRP PGLHMSHYPP NYVPYGYFSP FYLPPPTMHQ YLSNGAYAQQ PQASGVYPPP PGTATGGKYT LPHYKPGTNT GNMTHVGITG
701: GYGPTYGSFP AGYNPTSAAS AGNSTSNEDL NSLQLKENNG YSTTGQQSEA LPVWITGPGR DVPSSFYGLQ HHGQHVTYAP AQAGHVAFPG MYHPGQAVTA
801: TGVHHPLLQQ SQGVAGAEMV APAPNVFQQP QQTQMNWPSN Y
Arabidopsis Description
Flocculation protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q0WUY5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.