Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g018250.2.1 | Tomato | plastid | 11.74 | 93.4 |
| CDY61561 | Canola | cytosol | 5.58 | 71.21 |
| Solyc02g071180.2.1 | Tomato | nucleus | 69.28 | 70.11 |
| KRH38470 | Soybean | endoplasmic reticulum | 6.29 | 67.09 |
| VIT_10s0003g02740.t01 | Wine grape | nucleus | 57.65 | 55.8 |
| KRH36716 | Soybean | nucleus | 50.3 | 50.6 |
| KRH11725 | Soybean | nucleus | 49.94 | 50.12 |
| KRH59101 | Soybean | nucleus | 49.7 | 49.59 |
| KRH42968 | Soybean | nucleus | 48.99 | 49.34 |
| Zm00001d017358_P001 | Maize | nucleus | 6.17 | 47.27 |
| VIT_19s0014g03260.t01 | Wine grape | nucleus | 11.74 | 46.7 |
| Bra021900.1-P | Field mustard | nucleus | 45.43 | 46.65 |
| Zm00001d035703_P001 | Maize | nucleus | 14.83 | 46.3 |
| Bra022970.1-P | Field mustard | nucleus | 44.25 | 46.11 |
| CDY43685 | Canola | nucleus | 44.84 | 45.54 |
| CDX84653 | Canola | nucleus | 43.77 | 45.39 |
| CDY43334 | Canola | nucleus | 43.53 | 44.65 |
| AT1G29370.1 | Thale cress | nucleus | 43.89 | 44.52 |
| CDY48333 | Canola | nucleus | 43.42 | 44.47 |
| AT1G29350.1 | Thale cress | nucleus | 43.77 | 44.4 |
| CDX90188 | Canola | nucleus | 43.3 | 44.4 |
| Bra030134.1-P | Field mustard | nucleus | 41.04 | 44.25 |
| Bra010832.1-P | Field mustard | nucleus | 42.82 | 43.92 |
| CDY15632 | Canola | nucleus | 40.93 | 43.89 |
| CDX94662 | Canola | nucleus | 41.52 | 43.48 |
| CDX99817 | Canola | nucleus | 31.79 | 43.23 |
| CDY61562 | Canola | nucleus | 39.03 | 43.18 |
| Bra032310.1-P | Field mustard | nucleus | 43.18 | 42.37 |
| CDY61669 | Canola | nucleus | 36.65 | 41.76 |
| Zm00001d035814_P001 | Maize | cytosol, mitochondrion, nucleus, plastid, vacuole | 7.47 | 41.18 |
| CDX78828 | Canola | nucleus | 33.57 | 40.54 |
| Bra013287.1-P | Field mustard | nucleus | 37.37 | 40.38 |
| GSMUA_Achr7P25510_001 | Banana | nucleus | 39.86 | 40.24 |
| CDY37665 | Canola | cytosol, nucleus, plastid | 31.2 | 39.25 |
| GSMUA_Achr4P14940_001 | Banana | nucleus | 39.26 | 38.99 |
| KXG33052 | Sorghum | nucleus | 37.84 | 38.76 |
| Zm00001d011517_P002 | Maize | nucleus | 37.49 | 37.62 |
| GSMUA_Achr3P31170_001 | Banana | nucleus | 39.15 | 37.59 |
| GSMUA_Achr4P07880_001 | Banana | nucleus | 40.45 | 37.47 |
| AT4G18150.1 | Thale cress | nucleus | 33.69 | 37.47 |
| Zm00001d043962_P001 | Maize | nucleus | 37.01 | 37.05 |
| Os01t0663800-01 | Rice | plasma membrane | 37.25 | 36.9 |
| KXG22544 | Sorghum | nucleus | 37.01 | 36.45 |
| Os05t0566900-01 | Rice | extracellular | 36.77 | 36.38 |
| TraesCS3B01G269500.1 | Wheat | nucleus | 36.42 | 36.33 |
| TraesCS3D01G241600.2 | Wheat | nucleus | 36.18 | 36.18 |
| TraesCS1A01G403900.1 | Wheat | nucleus | 36.89 | 35.87 |
| TraesCS1D01G411700.1 | Wheat | nucleus | 37.01 | 35.86 |
| TraesCS1B01G433400.1 | Wheat | nucleus | 37.13 | 35.85 |
| TraesCS3A01G241400.3 | Wheat | nucleus | 34.4 | 35.63 |
| HORVU3Hr1G060080.3 | Barley | cytosol, nucleus, vacuole | 36.42 | 35.29 |
| Zm00001d009591_P006 | Maize | nucleus | 34.52 | 33.96 |
| Zm00001d039041_P007 | Maize | nucleus | 35.82 | 33.48 |
| HORVU1Hr1G089280.1 | Barley | nucleus | 37.13 | 33.05 |
| Zm00001d039138_P012 | Maize | nucleus | 32.03 | 32.57 |
| TraesCS1D01G428100.1 | Wheat | nucleus | 32.74 | 32.39 |
| TraesCS1A01G420300.1 | Wheat | nucleus | 32.38 | 32.31 |
| Zm00001d004950_P001 | Maize | nucleus | 11.86 | 32.26 |
| KXG22612 | Sorghum | nucleus | 31.67 | 32.09 |
| Zm00001d015193_P001 | Maize | nucleus, plastid | 8.3 | 31.25 |
| Os05t0581800-01 | Rice | nucleus | 30.61 | 30.28 |
| Zm00001d009683_P004 | Maize | nucleus | 30.25 | 29.96 |
| TraesCS1B01G450700.1 | Wheat | nucleus | 29.42 | 29.07 |
| CDY08888 | Canola | nucleus | 19.45 | 28.42 |
| HORVU1Hr1G091730.18 | Barley | mitochondrion | 29.06 | 28.42 |
| CDX76544 | Canola | nucleus | 19.1 | 28.3 |
| CDY11787 | Canola | nucleus | 23.84 | 27.27 |
| Bra021022.1-P | Field mustard | nucleus | 19.57 | 26.57 |
| AT5G46380.2 | Thale cress | nucleus | 18.62 | 23.72 |
| Solyc05g018750.2.1 | Tomato | nucleus | 20.05 | 20.71 |
| Solyc07g045230.2.1 | Tomato | nucleus | 20.88 | 20.09 |
| Solyc12g049230.1.1 | Tomato | nucleus | 17.2 | 18.38 |
Protein Annotations
| EnsemblPlants:Solyc03g005750.2.1 | EnsemblPlantsGene:Solyc03g005750.2 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:GIP1 |
| InterPro:UBA-like_sf | PANTHER:PTHR12758 | PANTHER:PTHR12758:SF20 | PFAM:PF06972 | SEG:seg | SUPFAM:SSF46934 |
| UniParc:UPI0002767605 | UniProt:K4BDZ9 | MapMan:35.2 | : | : | : |
Description
No Description!
Coordinates
chr3:+:525181..537611
Molecular Weight (calculated)
90047.2 Da
IEP (calculated)
5.093
GRAVY (calculated)
-0.777
Length
843 amino acids
Sequence
(BLAST)
(BLAST)
001: MTSRGGGKNS NNGGGIGVQS IPPGSRKMVQ SLKEIVNCPE AEIYAMLKEC NMDPNEAVNR LLTQDPFHEV KSKREKRKEI KDPTESRSWI TSSTPSRGSR
101: AGGDRYVGRG GSESTKPAPA YRKESGSQTN NFSSTPLIAG GNTDRRPTAI SDAAGNDSKR LAPAAVDGHS AASQPSSGYQ PTWGGVPGQV SMADIVKMGR
201: PQSKVPSVPN ISDSTAGVNQ NHDQAPPPYG ASHGNMQFSD DQSTVPEVHQ EPRDNSSQNL SANDEWPSIE QPSAASQPAV SEPPTNSVPH PDPSNMSFDR
301: VDHQTQIDES QEADESANEN LDCSLSSRKL QEDNADGTSL YDNDPYRYQH QNHTFDHPQV EDVNVSVSSV AANLQQLSVK DAAGLPSDGD SPSVVIPDHL
401: QVQTADCSHL SFGSFGGVSF SGSLASAPVK TSLEDASRDA DSSSVGHLGT RATEYYGDGT LRNEADSNLF HRNNANAGNY ELPAASQPES LKAEASDGHY
501: SYPSSAAGYS YESAQQLNAA FSQPQTSSHM QNLASFSNET VYTNSLQSDM LTANVHPGRE SELSYSPFST TQAMPTKYGN SISSISGSAM PEAMKTVGFS
601: SAQPTQQMLS GNSVATGPGV PQHLTVHQYS QQAVPIAPYG NMISYPFVPQ NYSYIPSAFQ QAYPGNSSYH QSLAAMLPQY KNTVSASSLP QSATIPSGYG
701: AFGNTTSIPG NFPINPPAAP SGTNLSYDDV LSAQFKDTNH LMSLQQNENS ALWLHGHGSR TMPTVPANTY YGFQGQNQQT GGFRQGQQPS QSYGSLGGYP
801: HFYNSQAGIS LDQQQQENLR DGSLSGSQGQ PKQSQQQLWQ NGY
101: AGGDRYVGRG GSESTKPAPA YRKESGSQTN NFSSTPLIAG GNTDRRPTAI SDAAGNDSKR LAPAAVDGHS AASQPSSGYQ PTWGGVPGQV SMADIVKMGR
201: PQSKVPSVPN ISDSTAGVNQ NHDQAPPPYG ASHGNMQFSD DQSTVPEVHQ EPRDNSSQNL SANDEWPSIE QPSAASQPAV SEPPTNSVPH PDPSNMSFDR
301: VDHQTQIDES QEADESANEN LDCSLSSRKL QEDNADGTSL YDNDPYRYQH QNHTFDHPQV EDVNVSVSSV AANLQQLSVK DAAGLPSDGD SPSVVIPDHL
401: QVQTADCSHL SFGSFGGVSF SGSLASAPVK TSLEDASRDA DSSSVGHLGT RATEYYGDGT LRNEADSNLF HRNNANAGNY ELPAASQPES LKAEASDGHY
501: SYPSSAAGYS YESAQQLNAA FSQPQTSSHM QNLASFSNET VYTNSLQSDM LTANVHPGRE SELSYSPFST TQAMPTKYGN SISSISGSAM PEAMKTVGFS
601: SAQPTQQMLS GNSVATGPGV PQHLTVHQYS QQAVPIAPYG NMISYPFVPQ NYSYIPSAFQ QAYPGNSSYH QSLAAMLPQY KNTVSASSLP QSATIPSGYG
701: AFGNTTSIPG NFPINPPAAP SGTNLSYDDV LSAQFKDTNH LMSLQQNENS ALWLHGHGSR TMPTVPANTY YGFQGQNQQT GGFRQGQQPS QSYGSLGGYP
801: HFYNSQAGIS LDQQQQENLR DGSLSGSQGQ PKQSQQQLWQ NGY
001: MSSSKVGGGA RKGIQDIPSG SRKIVQSLTE IVNSPEAEIY AMLKECNMDP NETVSRLLSQ DPFHEVKSKK EKKKETRDIS DSRPRGANNT YNRGARGGSA
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
101: RYAGRSGSTH FSSTDSGNFQ GKSTNKKESG TQGYTSSWSS ASGVANTYQT PHSEPVATEN KLPPVTLGDG ISSSQSASGH QTAWFGAPGQ RSMAEVVKMG
201: RPQNKTTKQN VNMGSEINHE HKVSANHQAP VKDEWPSIEK PLAPSTSSLS VAPAESEVRN GPADFQSDRG DQYLKDRLEN IHIAESGPSE SRKVDHVQAD
301: SVQEDESVVS SEIDDNPYQT QSHPVEHHKD EDDVSSGSAS FQQLDSHDQE VSHEKDRPAV VIPNHLLIHT EECAQLSFGS FGGFGSRPLS NSVEATSDVA
401: PQIEHSDARN TEFYGDEHLG STTNGNMVHT PATGNYDDSL ETRREVLKQE NSEGAQEHQY TFTQSEQGYA YENAKQQQMN SAYDASHTNS QNQMHNLDSL
501: SNVMQGYSHS VPNTLLAQTA QNARELDFQY SPFSAQQSMQ SRTSNNASSL GGQSISMPEA LRGSGIPATQ PTQQTLPGAN IATGPALPQQ LPMHYSQPTL
601: PLTHYANMIG YPLMPQNYPY MPSAFQQTFA GNSAYHQQLA ALLPQYKTNV SPGNLPQSAT APASAYGFGN STNVGSAGNF PLNQQSATTG TTLGYDDVLS
701: SQYKENHLLA LQQQQQQQQH QQQNENSAMW HQGHGSRTMS GVPTNTYYNL QAQQQLQLQH QQQQQQAQQA AGGYRQAQQQ QHYGSHGYPN YYQSQTEMSL
801: ERQQQNPRDG AGSQAGQPSN QSQQQLWQNS Y
Arabidopsis Description
RNA polymerase II degradation factor-like protein (DUF1296) [Source:UniProtKB/TrEMBL;Acc:Q8VZT4]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.